SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45844

Length: 256 nt

UniGene Fasta

>sp_v1.1_unigene45844
TTTGTCGTTGTGGAAGAAGAAACTGTTCAAGCATCCGCCTACAGCTAATTCACAATGGCCGRCAGAATTTATTTGTCCAATTTCCATGGCGCCGATGGCAGATCCTGTGATTGTTTCTTCAGGACAGTCTTATGAGAGAAGATGCATTGAAATCTGGATGGATCTTGGTCACAGACACTGTTATGTGAATGGAACGAAATTGAATTCTTCCACCGTCATACCAAATGTTGCCTTGAGAACTGCGATCTCTAATTGG

Ace file of the UniGene sp_v1.1_unigene45844

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Spotted leaf protein, putative	-	-	6.0e-13	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	cell death-related protein spl11	-	-	6.03734e-14	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	6.03734e-14	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	6.03734e-14	66%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	6.03734e-14	66%
Blast2go	nucleus	GO:0005634	Cellular Component	6.03734e-14	66%
Blast2go	cytosol	GO:0005829	Cellular Component	6.03734e-14	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	U box domain	IPR003613	-	6.03734e-14	66%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	6.03734e-14	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: Distance to subject end: 310 aas, your sequence is shorter than subject: 85 - 497

Fln protein: LSLWKKKLFKHPPTANSQWPAEFICPISMAPMADPVIVSSGQSYERRCIEIWMDLGHRHCYVNGTKLNSSTVIPNVALRTAISNW

Protein Length: 86

Fln nts: TTTGTCGTTGTGGAAGAAGAAACTGTTCAAGCATCCGCCTACAGCTAATTCACAATGGCCGgCAGAATTTATTTGTCCAATTTCCATGGCGCCGATGGCAGATCCTGTGATTGTTTCTTCAGGACAGTCTTATGAGAGAAGATGCATTGAAATCTGGATGGATCTTGGTCACAGACACTGTTATGTGAATGGAACGAAATTGAATTCTTCCACCGTCATACCAAATGTTGCCTTGAGAACTGCGATCTCTAATTGG

Fln Alignment:

sp_v1.1_unigene45844___WPAEFICPISMAPMADPVIVSSGQSYERRCIEIWMDLGHRHCYVNGTKLNSSTVIPNVALRTAISNW
C0PSB5_______________FPEDFRCPISLELMQDPVIVATGQTYDRLCIQRWLDLGHKTCPKTQQVLPHMTLTPNYVLRSLIAQW

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain