SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45812

Length: 526 nt

UniGene Fasta

>sp_v1.1_unigene45812
TCTGACTCATACCCAACCCCAAGGCATGATCAGCATCAGATGCAATTACCAAAGGTACCCACCTCCACCTCACCTGCATCTGCATCTTCGCCTGATTCGCCACCTTCTGATCCTCCTCCTCCCCGCCATGGTCGAGGTAGGAAAAAGAGACAGCTCAAGGCAGTTGTGGCCGAAGAATCTGCTGCCCAAAGATCCCTCACTCAGGGGTCACGAGTCCAACCACCTGCTGGAGTACCCGATTATGCCCACGAGAAGGACGAACAGACACAAAGTCAGGAAGCACCAGAGCCAGTTTCAGGTGAACTGACAGAGCATCAGGCAGCAACCCCAATTCCAAAGAGGAAACTGCTTGAGCTTGTCCTTGATAAGCTTCAAAAAAAGGCACATACGAAGTGTTTGCTGAACCCGTTGATCCTGAGGAGGTACCTGATTACTATGATTTCATTAAAAACCCAATGGATTTTAGTACTATAAGGAAGAAACTTGACAAAAGGAGTCTATGTGAGTTTGGAGCAATTTGAGCAGC

Ace file of the UniGene sp_v1.1_unigene45812

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA binding; K11723 bromodomain-containing protein 7/9	-	-	3.0e-14	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	dna binding	-	-	6.35618e-14	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPU6

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 46 aas, your sequence is shorter than subject: 173 - 630

Fln protein: *LIPNPKA*SASDAITKGTHLHLTCICIFA*FATF*SSSSPPWSR*EKETAQGSCGRRICCPKIPHSGVTSPTTCWSTRLCPREGRTDTKSGSTRASFR*TDRASGSNPNSKEETA*ACP**ASKKGTYEVFAEPVDPEEVPDYYDFIKNPMDFSTIRKKLDKRSLCEFGAI*

Protein Length: 174

Fln nts: TCTGACTCATACCCAACCCCAAGGCATGATCAGCATCAGATGCAATTACCAAAGGTACCCACCTCCACCTCACCTGCATCTGCATCTTCGCCTGATTCGCCACCTTCTGATCCTCCTCCTCCCCGCCATGGTCGAGGTAGGAAAAAGAGACAGCTCAAGGCAGTTGTGGCCGAAGAATCTGCTGCCCAAAGATCCCTCACTCAGGGGTCACGAGTCCAACCACCTGCTGGAGTACCCGATTATGCCCACGAGAAGGACGAACAGACACAAAGTCAGGAAGCACCAGAGCCAGTTTCAGGTGAACTGACAGAGCATCAGGCAGCAACCCCAATTCCAAAGAGGAAACTGCTTGAGCTTGTCCTTGATAAGCTTCAAAAAAAGGCACATACGAAGTGTTTGCTGAACCCGTTGATCCTGAGGAGGTACCTGATTACTATGATTTCATTAAAAACCCAATGGATTTTAGTACTATAAGGAAGAAACTTGACAAAAGGAGTCTATGTGAGTTTGGAGCAATTTGAGCAGC

Fln Alignment:

sp_v1.1_unigene45812___FAEPVDPEEVPDYYDFIKNPMDFSTIRKKLD
B8LPU6_______________FKDPVDPRDVPDYYDIIKDPMDLKTMSKRLD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain