SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45787

Length: 404 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene45787
CGTCGGCATGTTTAAAGCGCCGCGCATGGCTTATCGTATTTTCATCGGAATGTCGCTTCAGATGTTTCAGCAGCTCACTGGTGCGAATTACTCTTTTACTACGGCACTACCATCTTTCAGTCTGTGTCTATCAACAGCTACAAGACGCAGATTATTCTGAACACGATTAACTTCCTGGTTACGTTTATTGGATTGTATATCGTTGAGCACTACGGTCGACGCAAGTCGCTTATTGCGGGAAGTACTTGGATGTTCATCTGCTTCCTTATCTTTGCATCTGTTGGTCATTTCTCACTCGATCGCAATGATCCCACCAAGACGCAGGGCGCAGGTATTGCTATGATCGTCTTTGCTTGTCTCTTCATTCTGGGCTTCGCTACGACTTGGGGTCCTATGATTTGGAC

Ace file of the UniGene sp_v1.1_unigene45787 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Hexose transporter n=1 Tax=Sporothrix schenckii RepID=B2MW83_SPOSC	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	27%
Blast2go	mfs monosaccharide	-	-	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLP1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 121 aas, your sequence is shorter than subject: 134 - 529

Fln protein: RRHV*SAAHGLSYFHRNVASDVSAAHWCELLFYYGTTIFQSVSINSYKTQIILNTINFLVTFIGLYIVEHYGRRKSLIAGSTWMFICFLIFASVGHFSLDRNDPTKTQGAGIAMIVFACLFILGFATTWGPMIW

Protein Length: 135

Fln nts: CGTCGGCATGTTTAAAGCGCCGCGCATGGCTTATCGTATTTTCATCGGAATGTCGCTTCAGATGTTTCAGCAGCTCACTGGTGCGAATTACTCTTTTACTACGGCACTACCATCTTTCAGTCTGTGTCTATCAACAGCTACAAGACGCAGATTATTCTGAACACGATTAACTTCCTGGTTACGTTTATTGGATTGTATATCGTTGAGCACTACGGTCGACGCAAGTCGCTTATTGCGGGAAGTACTTGGATGTTCATCTGCTTCCTTATCTTTGCATCTGTTGGTCATTTCTCACTCGATCGCAATGATCCCACCAAGACGCAGGGCGCAGGTATTGCTATGATCGTCTTTGCTTGTCTCTTCATTCTGGGCTTCGCTACGACTTGGGGTCCTATGATTTGGAC

Fln Alignment:

sp_v1.1_unigene45787___LFYYGTTIFQSVSIN---SYKTQIILNTINFLVTFIGLYIVEHYGRRKSLIAGSTWMFICFLIFASVGHFSLDRNDPTKTQGAGIAMIVFACLFILGFATTWGPMIW
B8LLP1_______________IMFYAPVLFQTLGFKNDASLYSAVITGAVNVLSTVISIFAVDKVGRRALLLEAGVQMFISQVIIAILLATGL-KDGEDLPHATAIIIVLLVCVFVSSFAWSWGPLGW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain