SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45781

Length: 446 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene45781
GCTACTGCAAAAGAACACTATGGTTGAAGGTCTTCCTGTCTTGAAAAATGATCATGTTGAATGTGAGGCATGTGTACTTGGCAAGCAACATAGGGAGGAATTTCCTATACATAAAGAAAAAAGGACAAAGGGAAATACTTGAATTAATTCATACTGATGTATGTGGACCTATGCAAACTAGATCTATTGGTGGAGCATGGTATTTTCTTATTTTTGTGGATGATAGATCTAGATACACATGGGTTTATTTCATAAGAAAGAAGAGTGATGTTTTTGAGTATTTTAAAGAATTTAAGAATATGGTAGAAAAACAAACTGGTAAATATATCAAAATCTTGAGATCTGATCAAGGGGGAGAATTCAAATCAAGAGAATTTAATCAATATTGTAAAAGCAATGGGATTCAGCAACAATTTACAGTACCACATACACCTCAGCAAAATGGA

Ace file of the UniGene sp_v1.1_unigene45781 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-type polyprotein, putative n=3 Tax=Arabidopsis thaliana RepID=Q9C739_ARATH	-	-	2.0e-39	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	copia-type polyprotein	-	-	3.6654e-39	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Integrase, catalytic core	IPR001584	-	3.6654e-39	76%
Blast2go	Ribonuclease H-like domain	IPR012337	-	3.6654e-39	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 171 aas, your sequence is shorter than subject: 148 - 407

Fln protein: YCKRTLWLKVFLS*KMIMLNVRHVYLASNIGRNFLYIKKKGQREILELIHTDVCGPMQTRSIGGAWYFLIFVDDRSRYTWVYFIRKKSDVFEYFKEFKNMVEKQTGKYIKILRSDQGGEFKSREFNQYCKSNGIQQQFTVPHTPQQNG

Protein Length: 149

Fln nts: GCTACTGCAAAAGAACACTATGGTTGAAGGTCTTCCTGTCTTGAAAAATGATCATGTTGAATGTGAGGCATGTGTACTTGGCAAGCAACATAGGGAGGAATTTCCTATACATAAAGAAAAAAGGACAAAGGGAAATACTTGAATTAATTCATACTGATGTATGTGGACCTATGCAAACTAGATCTATTGGTGGAGCATGGTATTTTCTTATTTTTGTGGATGATAGATCTAGATACACATGGGTTTATTTCATAAGAAAGAAGAGTGATGTTTTTGAGTATTTTAAAGAATTTAAGAATATGGTAGAAAAACAAACTGGTAAATATATCAAAATCTTGAGATCTGATCAAGGGGGAGAATTCAAATCAAGAGAATTTAATCAATATTGTAAAAGCAATGGGATTCAGCAACAATTTACAGTACCACATACACCTCAGCAAAATGGA

Fln Alignment:

sp_v1.1_unigene45781___YIKKKGQREI--LELIHTDVCGPMQTRSIGGAWYFLIFVDDRSRYTWVYFIRKKSDVFEYFKEFKNMVEKQTGKYIKILRSDQGGEFKSREFNQYCKSNGIQQQFTVPHTPQQNG
B8LKX7_______________FIKGKSWRAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain