SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45780

Length: 522 nt

UniGene Fasta

>sp_v1.1_unigene45780
ATGGGGGAAGTTCTCGCTAGCTTGACTACCCTATATCCTTTATCTGTTTGGGCACTTGAAGGTGGTGATCCTTGTTTACCAGTTCCTTGGACGTGGGTGCAGTGTAGTTTGGATGCACGACCAAGGGTTACTGCAATCCTTTTGTCAGGAAAAATTTGACAGGGCAGATACCTTTACAAATATTAAATTTGACAGCGCTGGCTGATTTGTGGCTTGATCACAACTTTCTAAATGGTTCATTACCTGATTTTGGTGTTTTAGTTGACTTAAAGAGATTGCACCTTGAATATAACCAATTGAGTGGTACCTTACCTGTGTCTTTGGCAGATTTGCCAAACCTAAAAGAACTGTATGTGCAGAATAACCTGTTATCTGGAACTGTGGCTCATCAATTACTGGATAAAGATCTGATTTTCAAGGTCTGGAGGCAAGCACGTGGCACTAATTATTGGCATTACAGTTGGGGCAGCGTTACTGATATTTGCTGCAGCAGTAACTGGCTCCTACTGGAGGTGGTCAGTT

Ace file of the UniGene sp_v1.1_unigene45780

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kinase	-	-	1.0e-32	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	protein	-	-	2.81421e-38	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	2.81421e-38	68%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.81421e-38	68%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW70

Fln msg: Distance to subject end: 42 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 138 - 207

Fln protein: FGCTTKGYCNPFVRKNLTGQIPLQILNLTALADLWLDHNFLNGSLPDFGVLVDLKRLHLEYNQLSGTLPVSLADLPNLKELYVQNNLLSGTVAHQLLDKDLIFKVWRQARGTNYWHYSWGSVTDICCSSNWLLLEVVS

Protein Length: 139

Fln nts: ATGGGGGAAGTTCTCGCTAGCTTGACTACCCTATATCCTTTATCTGTTTGGGCACTTGAAGGTGGTGATCCTTGTTTACCAGTTCCTTGGACGTGGGTGCAGTGTAGTTTGGATGCACGACCAAGGGTTACTGCAATCCTTTTGTCAGGAAAAATTTGACAGGGCAGATACCTTTACAAATATTAAATTTGACAGCGCTGGCTGATTTGTGGCTTGATCACAACTTTCTAAATGGTTCATTACCTGATTTTGGTGTTTTAGTTGACTTAAAGAGATTGCACCTTGAATATAACCAATTGAGTGGTACCTTACCTGTGTCTTTGGCAGATTTGCCAAACCTAAAAGAACTGTATGTGCAGAATAACCTGTTATCTGGAACTGTGGCTCATCAATTACTGGATAAAGATCTGATTTTCAAGGTCTGGAGGCAAGCACGTGGCACTAATTATTGGCATTACAGTTGGGGCAGCGTTACTGATATTTGCTGCAGCAGTAACTGGCTCCTACTGGAGGTGGTCAGTT

Fln Alignment:

sp_v1.1_unigene45780___KNLTGQIPLQILNLTALADLWLDHNFLNGSLPDFGVLVDLKRLHLEYNQLSGTLPVSLADLPNLKELYVQNNLLSGTVAHQLL
A9NW70_______________RNLTIPVPEEIGQLTALVNLSLENNHLMGPLPNFSSLTMLERLYLQNNSLNGSVPDWLSGLKNLKELFIQNNNFSGVIPAQLL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain