SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45736

Length: 507 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene45736
GGTCAGGTTGTCATCATATAAATCAATTCTCGCGGCTCGGGGAAGGCTGTATCTTTAGAAAGGGCGGACTCGGCAGCAGGGCTGTGGAGGGCCAGAGTGGCTCCGGCGCGACAGAAAGAAAGTTTTTCTTATATTTTGCTGCCTGATGAAAGGTATTTCTGAGTGGCTGCCCTGTGACAAAAGTATTTTACCAATGGAAACAGAACTCTGGAAAACGCTCCCAGAAGAGTTGCTGTATATGATTTTAGCGAGGCTGCCCATTAGGGTTTTTGGCAAAATGAAGACTGTCTGTAAAAAGTGGAAATATCTTCTGTCTTCCCGTGACGCCCTGCAAGTATCTGTTCCAAATTGGTCGTTGCATTCCATCCCTGGGTTTCTGCTTCAATTCCAGTGGAATCAGAATGATGACGCAGAATATTGGGGTATAGAAGGAAGCTTTTGCGACCTTTACAAACTTCCTTTCTTCGATCACATCGTTGTGGATACTTGTAAGAGTATGTTCTGTTG

Ace file of the UniGene sp_v1.1_unigene45736

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F-box family protein	-	-	3.0e-05	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%

Source	InterPros	Term	Type	e value	Identity
Blast2go	F-box domain, cyclin-like	IPR001810	-	0.0	-
Blast2go	F-box domain, Skp2-like	IPR022364	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPY6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 248 aas, your sequence is shorter than subject: 168 - 437

Fln protein: VRLSSYKSILAARGRLYL*KGRTRQQGCGGPEWLRRDRKKVFLIFCCLMKGISEWLPCDKSILPMETELWKTLPEELLYMILARLPIRVFGKMKTVCKKWKYLLSSRDALQVSVPNWSLHSIPGFLLQFQWNQNDDAEYWGIEGSFCDLYKLPFFDHIVVDTCKSMFC

Protein Length: 169

Fln nts: GGTCAGGTTGTCATCATATAAATCAATTCTCGCGGCTCGGGGAAGGCTGTATCTTTAGAAAGGGCGGACTCGGCAGCAGGGCTGTGGAGGGCCAGAGTGGCTCCGGCGCGACAGAAAGAAAGTTTTTCTTATATTTTGCTGCCTGATGAAAGGTATTTCTGAGTGGCTGCCCTGTGACAAAAGTATTTTACCAATGGAAACAGAACTCTGGAAAACGCTCCCAGAAGAGTTGCTGTATATGATTTTAGCGAGGCTGCCCATTAGGGTTTTTGGCAAAATGAAGACTGTCTGTAAAAAGTGGAAATATCTTCTGTCTTCCCGTGACGCCCTGCAAGTATCTGTTCCAAATTGGTCGTTGCATTCCATCCCTGGGTTTCTGCTTCAATTCCAGTGGAATCAGAATGATGACGCAGAATATTGGGGTATAGAAGGAAGCTTTTGCGACCTTTACAAACTTCCTTTCTTCGATCACATCGTTGTGGATACTTGTAAGAGTATGTTCTGTTG

Fln Alignment:

sp_v1.1_unigene45736___METELWKTLPEELLYMILARLPIRVFGKMKTVCKKWKYLLSSRDALQ
C0PPY6_______________MEEKIWKEFPEDLIERVIARLPIAAFFRFRSVCRRWNSLLNSRSFSQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain