SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45721

Length: 326 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene45721
AACTTGAGTGGAAAAATTCCGACTGAACTGGGCTCACTGCAAAATTTACAGTACATGTATCTACAATCAAACAAGTTGGAGAGCACTATTCCTCCGTCTCTAGGAAACTGCTCTTCTCTTCAGGTTTTATTTTTGGGAGACAATCGAGCATTATCAGGTAATATCCCATCTCAATTTGGTCATTTGAAAGAGCTTAGTCAACTATCCATTTATGGCCCAGGTAGTATTTCAGGTCTTATCCCTTCTGAAATAGTAACTGCAGCAATCTTGTATGGTTGGATTTAGAATACAATAGAATTCAAGGCTCCTTGCCTATGAGTATGTTT

Ace file of the UniGene sp_v1.1_unigene45721

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus RepID=D7FX56_ECTSI	-	-	1.0e-14	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	leucine-rich repeat receptor protein kinase exs	-	-	1.44154e-34	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	1.44154e-34	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Overlapping hits, possible frame ERROR between 252 and 234, Distance to subject end: 394 aas, your sequence is shorter than subject: 109 - 818

Fln protein: NLSGKIPTELGSLQNLQYMYLQSNKLESTIPPSLGNCSSLQVLFLGDNRALSGNIPSQFGHLKELSQLSIYGPGSISxxxxxxxxNCSNLVWLDLEYNRIQGSLPMSMF

Protein Length: 110

Fln nts: AACTTGAGTGGAAAAATTCCGACTGAACTGGGCTCACTGCAAAATTTACAGTACATGTATCTACAATCAAACAAGTTGGAGAGCACTATTCCTCCGTCTCTAGGAAACTGCTCTTCTCTTCAGGTTTTATTTTTGGGAGACAATCGAGCATTATCAGGTAATATCCCATCTCAATTTGGTCATTTGAAAGAGCTTAGTCAACTATCCATTTATGGCCCAGGTAGTATTTCAxxxxxxxxxxxxxxxxxxxxxxxxAACTGCAGCAATCTTGTATGGTTGGATTTAGAATACAATAGAATTCAAGGCTCCTTGCCTATGAGTATGTTT

Fln Alignment:

sp_v1.1_unigene45721___NLSGKIPTELGSLQNLQYMYLQSNKLESTIPPSLGNCSSLQVLFLGDNRALSGNIPSQFGHLKELSQLSIYGP----GSISGxxxxxxSNCSNLVWLDLEYNRIQGSLPMSMF
B8LQX6_______________NLVGRIPAELGLLQNLQKLYLHTNKLESTIPPSLGNCSSLENLFLGDNR-LSGNIPSQFGSLRELFQLSIYGPEYVKGSISGxxxxxxGNCSSLVWLDFGNNRVQGSVPMSIF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain