SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45697

Length: 434 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene45697
CGTCGTGACCTTGGCTGTCACTCATTGATACTCCGAAAGGGCTTCAAGATCAGACAGGGCTCTTGTTTTTCATTGCTGTTTTCTGGGGATTCTTCCCAGTTTTTACTACAATTTTTACATTTCCTCAAGAACGAGCCATGTTTGCAAAGGAGCGGGCAGTAGACATGTACAGACTAAGCGCATACTTTATGGCTCGAAACTTAAGTGACATGCCACTCGACCTCTTTCTTCCCGTTGTATATTTGCTCATAGTTTACTTCATGACAAACTTAAGAATGACGGTTGCAGCCTTTTTTCTACCATGCTCACACTATTCCTCAGTATTATTGCAGCTCAGCGAGTTCCTGTGTTTATACAATGGATCAGGTATCTCTCTTTTAATACTATACATATAGGATTTTACTCAAAACACAGTATGACAGACATCAACAGTA

Ace file of the UniGene sp_v1.1_unigene45697

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	White-brown-complex ABC transporter family n=2 Tax=Populus trichocarpa RepID=B9IIG9_POPTR	-	-	3.0e-29	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	abc transporter family protein	-	-	8.20878e-32	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	8.20878e-32	71%

Source	KEGGs	Term	e value	Identity
Blast2go	Purine metabolism	00230	8.20878e-32	71%
Blast2go	Thiamine metabolism	00730	8.20878e-32	71%
Blast2go	Metabolic pathways	01100	8.20878e-32	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	8.20878e-32	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	8.20878e-32	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ABC-2 type transporter	IPR013525	-	8.20878e-32	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNF9

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 100 aas, your sequence is shorter than subject: 131 - 819

Fln protein: S*PWLSLIDTPKGLQDQTGLLFFIAVFWGFFPVFTTIFTFPQERAMFAKERAVDMYRLSAYFMARNLSDMPLDLFLPVVYLLIVYFMTNLRMTVAAFFLPCSHYSSVLLQLSEFLCLYNGSGISLLILYI*

Protein Length: 132

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGATACTCCGAAAGGGCTTCAAGATCAGACAGGGCTCTTGTTTTTCATTGCTGTTTTCTGGGGATTCTTCCCAGTTTTTACTACAATTTTTACATTTCCTCAAGAACGAGCCATGTTTGCAAAGGAGCGGGCAGTAGACATGTACAGACTAAGCGCATACTTTATGGCTCGAAACTTAAGTGACATGCCACTCGACCTCTTTCTTCCCGTTGTATATTTGCTCATAGTTTACTTCATGACAAACTTAAGAATGACGGTTGCAGCCTTTTTTCTACCATGCTCACACTATTCCTCAGTATTATTGCAGCTCAGCGAGTTCCTGTGTTTATACAATGGATCAGGTATCTCTCTTTTAATACTATACATATAGGATTTTACTCAAAACACAGTATGACAGACATCAACAGTA

Fln Alignment:

sp_v1.1_unigene45697___WLSLIDTPKGLQDQTGLLFFIAVFWGXXXXXXXXXXXXQERAMFAKERAVDMYRLSAYFMARNLSDMPLDLFLPVVYLLIVYFMTNLRMTVAAFFLPCSHYSSVLLQLSEFLCLYNGSGISLLI
B8LNF9_______________WQSNIDTPKGLQDQIGLIFFIAVFWGFFPVFTAIFTFPQERAMLSKERAVDMYRLSAYFMARILSDLPLDLFLPIGFLLIVYFMAHLRMTVTAF---------LLTMLTTFLSIVASQGLGLAI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
143	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain