SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45670

Length: 444 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene45670
GTTGACTCTTGCTGGTCGTGAGATATTTACCAATTTCCTGTCAAGTGTAATGATCCATGCAACTCGCCCTTTTGTTGTGAGTGAGTGGATTCATAGCCGTCGATCTTGGAACATGTTGGTTGGTGGTCTCCGACTATTGTCAGAGGAGATGATCGGGAGGCTGTGCATATTCCAAATCACAAGTTCACTGTGAGTGTTGTTCGGAATCTTACTCAAAAGAGCCATTGGCGCATTAAGACTCATCTCGCTATCAGCCATCTAGATGTCAGCAAAATTGGTAATATTGTAGCTGATATGCGGAAAGTCTTAGCAAAAAATCATCAAGTGGAGCAACAACGGTTGCATCGAAGAGTATTTTTGGATAATATCGATCCAGAAAATCAGGCACTTTTGATTTTGGTTTCTTGCTTTGTAAAGACCCACCTTCGCAGTGAGTGACAGGCC

Ace file of the UniGene sp_v1.1_unigene45670

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	MSL2; MSL2 (MscS-LIKE 2); ion channel	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	87%
Blast2go	mscs-like 2 protein	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	response to osmotic stress	GO:0006970	Biological Process	94%
Blast2go	plastid organization	GO:0009657	Biological Process	94%
Blast2go	ion channel activity	GO:0005216	Molecular Function	94%
Blast2go	plastid envelope	GO:0009526	Cellular Component	94%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5B966

Fln msg: Separated hits, possible frame ERROR between 100 and 106, Unexpected STOP codon at 3' end. Distance to subject end: 295 aas, your sequence is shorter than subject: 146 - 738

Fln protein: LTLAGREIFTNFLSSVMIHATRPFVVSEWIHSxxxLEHVGWWSPTIVRGDDREAVHIPNHKFTVSVVRNLTQKSHWRIKTHLAISHLDVSKIGNIVADMRKVLAKNHQVEQQRLHRRVFLDNIDPENQALLILVSCFVKTHLRSE*

Protein Length: 147

Fln nts: GTTGACTCTTGCTGGTCGTGAGATATTTACCAATTTCCTGTCAAGTGTAATGATCCATGCAACTCGCCCTTTTGTTGTGAGTGAGTGGATTCATAGCCGxxxxxxCTTGGAACATGTTGGTTGGTGGTCTCCGACTATTGTCAGAGGAGATGATCGGGAGGCTGTGCATATTCCAAATCACAAGTTCACTGTGAGTGTTGTTCGGAATCTTACTCAAAAGAGCCATTGGCGCATTAAGACTCATCTCGCTATCAGCCATCTAGATGTCAGCAAAATTGGTAATATTGTAGCTGATATGCGGAAAGTCTTAGCAAAAAATCATCAAGTGGAGCAACAACGGTTGCATCGAAGAGTATTTTTGGATAATATCGATCCAGAAAATCAGGCACTTTTGATTTTGGTTTCTTGCTTTGTAAAGACCCACCTTCGCAGTGAGTGACAGGCC

Fln Alignment:

sp_v1.1_unigene45670___LTLAGREIFTNFLSSVMIHATRPFVVSEWIHSRxxLEHVGWWSPTIVRGDDREAVHIPNHKFTVSVVRNLTQKSHWRIKTHLAISHLDVSKIGNIVADMRKVLAKNHQVEQQRLHRRVFLDNIDPENQALLILVSCFVKT
A5B966_______________LTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKxxVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDYIDPENQALLILVSCFVKT

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
76		33		66	0.997467
83			66	33	0.997464
107	33			66	0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain