SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45657

Length: 268 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene45657
GCTTCGATTCATGTTGGCAAGGAAATGTGTACAGGTTGATGTGTTGGTTACCACAGCAGGAGGGGTTGAAGAAGACTTGATTAAATGTCTAGCAACGACCTATACTGGTGATTTTTCACTACCCAAACCTGAGTTATGTTCAAATGGATTGAATCGAATTGGTAATCTGTTGATGCCTAATGACAATTACTGCAAGTTTGAATATTGGATCATACCCATTTGTTATTCAACTTTTAAAGGAGCAAAAAGAACATGTATTTATGTAGCA

Ace file of the UniGene sp_v1.1_unigene45657 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Deoxyhypusine synthase, putative n=1 Tax=Ricinus communis RepID=B9SW18_RICCO	-	-	1.0e-22	82%
FL-Next	sp=Deoxyhypusine synthase; Nicotiana tabacum (Common tobacco).	-	-	0.0	71%
Blast2go	deoxyhypusine synthase	-	-	5.37215e-23	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	senescence	GO:0010149	Biological Process	5.37215e-23	84%
Blast2go	peptidyl-lysine modification to hypusine	GO:0008612	Biological Process	5.37215e-23	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Deoxyhypusine synthase	IPR002773	-	5.37215e-23	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SC80

Fln msg: Distance to subject end: 178 aas, your sequence is shorter than subject: 89 - 379

Fln protein: LRFMLARKCVQVDVLVTTAGGVEEDLIKCLATTYTGDFSLPKPELCSNGLNRIGNLLMPNDNYCKFEYWIIPICYSTFKGAKRTCIYVA

Protein Length: 90

Fln nts: GCTTCGATTCATGTTGGCAAGGAAATGTGTACAGGTTGATGTGTTGGTTACCACAGCAGGAGGGGTTGAAGAAGACTTGATTAAATGTCTAGCAACGACCTATACTGGTGATTTTTCACTACCCAAACCTGAGTTATGTTCAAATGGATTGAATCGAATTGGTAATCTGTTGATGCCTAATGACAATTACTGCAAGTTTGAATATTGGATCATACCCATTTGTTATTCAACTTTTAAAGGAGCAAAAAGAACATGTATTTATGTAGCA

Fln Alignment:

sp_v1.1_unigene45657___LRFMLARKCVQVDVLVTTAGGVEEDLIKCLATTYTGDFSLPKPELCSNGLNRIGNLLMPNDNYCKFEYWIIPI
Q9SC80_______________IRYLVQHR--MVDVVVTTAGGIEEDLIKCLAPTYKGDFSLPGAVLRSKGLNRIGNLLVPNDNYCKFENWIIPI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain