SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45599

Length: 442 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene45599
GTAACGAAGGCGAGATAGCAGTTGTCAACGTTGAGAGTTTTGGAGCACAGGGTGACGGAATAACTGATGATACCCAGGCCTTTATGAATGCATGGCAAATGGCATGYTCATTGTCAAATTCTGTTTTTCTTGTTCCTGAAGGATATGTTTACCTTGTTAAACCCATCACGTTCACAGGTCCTTGCAATTCTGGTGGCAGCATGATTGTGCAGATAGCAGGGACTGTGGTTGCCCCTGACGACCCTACGACCTGGGATCCCCAGAATCCAAGAACATGGCTTGTATTTTCCAGATTGAATGGAGTGACCATCCAGGGGGAGGGCGTTATAGATGGTTCCGGCCAGAAATGGTGGGCGCAGTCCTGCAAGACCAATAAATCAAACCCCTGCCGATCCGCTCCAACGGCATTCACCGTCGATTTAAGCTGGAACGTAATAATTAA

Ace file of the UniGene sp_v1.1_unigene45599

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9SH91_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	protein	-	-	73%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 28	IPR000743	-	73%
Blast2go	Pectin lyase fold/virulence factor	IPR011050	-	73%
Blast2go	Pectin lyase fold	IPR012334	-	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX9

Fln msg: Distance to subject end: 267 aas, your sequence is shorter than subject: 146 - 493

Fln protein: NEGEIAVVNVESFGAQGDGITDDTQAFMNAWQMACSLSNSVFLVPEGYVYLVKPITFTGPCNSGGSMIVQIAGTVVAPDDPTTWDPQNPRTWLVFSRLNGVTIQGEGVIDGSGQKWWAQSCKTNKSNPCRSAPTAFTVDLSWNVII

Protein Length: 147

Fln nts: GTAACGAAGGCGAGATAGCAGTTGTCAACGTTGAGAGTTTTGGAGCACAGGGTGACGGAATAACTGATGATACCCAGGCCTTTATGAATGCATGGCAAATGGCATGtTCATTGTCAAATTCTGTTTTTCTTGTTCCTGAAGGATATGTTTACCTTGTTAAACCCATCACGTTCACAGGTCCTTGCAATTCTGGTGGCAGCATGATTGTGCAGATAGCAGGGACTGTGGTTGCCCCTGACGACCCTACGACCTGGGATCCCCAGAATCCAAGAACATGGCTTGTATTTTCCAGATTGAATGGAGTGACCATCCAGGGGGAGGGCGTTATAGATGGTTCCGGCCAGAAATGGTGGGCGCAGTCCTGCAAGACCAATAAATCAAACCCCTGCCGATCCGCTCCAACGGCATTCACCGTCGATTTAAGCTGGAACGTAATAATTAA

Fln Alignment:

sp_v1.1_unigene45599___VVNVESFGAQGDGITDDTQAFMNAWQMACSLSNSVFLVPEGYVYLVKPITFTGPCNSGGSMIVQIAGTVVAPDDPTTWDPQNPRTWLVFSRLNGVTIQGEGVIDGSGQKWWAQSCKTNKSNPCRSAPTAFTVDLSWNV
B8LQX9_______________VVCVDEFGAKGDGENDDTKAFNNAWSKACSSAPAVFLVPHGKKYLVKPIKFSGPCKS--ALTMQVSGTIIAPADPRVWDGLNRRQWLRFKEVDDLTVEGGGIFYGSGEQWWAESCKINKTNPCRPAPTAITFELCNNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain