SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45539

Length: 530 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene45539
AGCAATTCCAGCAGCTTGTAGAGCTTCAAGAGTCGGCAAGGGTTCTTGTAGAAATTGGGAATGGCAACAAGCAACATGTTGGAACTCAATCTCTTGGAGCAGTTCATGGTGGCTATGTGGACCTGAAGGATATTCTTGAAACTTGGAGGTTGAGGACTCCTAATGATTGGGATAATATATCTGTCTGGTATGATTTACTTCAGTGGCGAAATCACATGTATAACACTGTAATCAATGCATTTAAAGATTTTTCAAATACAAACCCCAGCTTCATCAACTTGGATGTGGTGACAAGGCATGGAGTGTTAACAAGCTTGCTCATGTTGCACGCAAGCAAGGACTTTATGATGTTTGTGTTACTGTGCTGAACAAAATGTATGGCTATGCACAAATGGAGGTTCAGGAAGCATTTGTGAAAATAAGAGAGCAAGCAAAAGCTTATTTAGAAATGAGAGGCGAGATACAAAATGGGTTTAACTTGATCAGTACTACCAATCTGGATTATTTTCCAGTTCAACACAAGGCAGAGA

Ace file of the UniGene sp_v1.1_unigene45539

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor; K08874 transformation/transcription domain-associated protein	-	-	73%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	70%
Blast2go	fat domain-containing protein	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	PIK-related kinase, FAT	IPR003151	-	0.0	85%
Blast2go	PIK-related kinase	IPR014009	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GZ68

Fln msg: Overlapping hits, possible frame ERROR between 281 and 263, Distance to subject end: 811 aas, your sequence is shorter than subject: 176 - 3844

Fln protein: QFQQLVELQESARVLVEIGNGNKQHVGTQSLGAVHGGYVDLKDILETWRLRTPNDWDNISVWYDLLQWRNHMYNTVINAFKDFSNTxxxxxxxxCGDKAWSVNKLAHVARKQGLYDVCVTVLNKMYGYAQMEVQEAFVKIREQAKAYLEMRGEIQNGFNLISTTNLDYFPVQHKAE

Protein Length: 177

Fln nts: AGCAATTCCAGCAGCTTGTAGAGCTTCAAGAGTCGGCAAGGGTTCTTGTAGAAATTGGGAATGGCAACAAGCAACATGTTGGAACTCAATCTCTTGGAGCAGTTCATGGTGGCTATGTGGACCTGAAGGATATTCTTGAAACTTGGAGGTTGAGGACTCCTAATGATTGGGATAATATATCTGTCTGGTATGATTTACTTCAGTGGCGAAATCACATGTATAACACTGTAATCAATGCATTTAAAGATTTTTCAAATACAxxxxxxxxxxxxxxxxxxxxxxxxTGTGGTGACAAGGCATGGAGTGTTAACAAGCTTGCTCATGTTGCACGCAAGCAAGGACTTTATGATGTTTGTGTTACTGTGCTGAACAAAATGTATGGCTATGCACAAATGGAGGTTCAGGAAGCATTTGTGAAAATAAGAGAGCAAGCAAAAGCTTATTTAGAAATGAGAGGCGAGATACAAAATGGGTTTAACTTGATCAGTACTACCAATCTGGATTATTTTCCAGTTCAACACAAGGCAGAGA

Fln Alignment:

sp_v1.1_unigene45539___QFQQLVELQESARVLVEIGNGNKQHVGTQSLGAVHGG-YVDLKDILETWRLRTPNDWDNISVWYDLLQWRNHMYNTVINAFKDFSNTNxxxxxxGCGDKAWSVNKLAHVARKQGLYDVCVTVLNKMYGYAQMEVQEAFVKIREQAKAYLEMRGEIQNGFNLISTTNLDYFPVQHKAE
B9GZ68_______________QFQQLVEVQESARILVDIANGNK--LSSTSAG-VHGNLYADLKDILETWRLRTPNEWDNMSVWYDLLQWRNEIYNSVIDAFKDFGTSNxxxxxxGFRDKAWNVNKLAHIARKQGLYDVCVTILEKMYGHSTMEVQEAFVKIREQAKAYLEIKGELTSGLNLIDGTNLEYFPVKHKAE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain