SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45536

Length: 353 nt

UniGene Fasta

>sp_v1.1_unigene45536
TGTTTTAATTTGCGAACTTTGCAAAGTTGGGGATATGAAGGGGGCTTCACAACTATTACATGAAATGCTGGATGAGGGTTTAGGTTTTGATAATATTAGCTACGATGCTGTGATTGATGGTTATTGCAAGAAGCAGAATACTGTTGAAGCTATGAAGTTCTTCAACCAAATTCTGCAGAGAGGTTGTCAACCAAATATCTCAACCTACAACATTTTGATTAGTGGGCTTGTCAATGAAGGCAGAGTCGGTAAGGGGATTAAGCTGCAAGATTATATGCTGAATAAAGGCTCTGCCCCAGACTTGACAACTTATAACTTGTTAATCAGTGGGCTGTGCAAAGAAGGAGATATGC

Ace file of the UniGene sp_v1.1_unigene45536

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PPR domain containing protein	-	-	0.0001	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Blast2go	pentatricopeptide repeat-containing protein	-	-	1.46746e-20	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	1.46746e-20	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE3

Fln msg: Distance to subject end: 39 aas, your sequence is shorter than subject: 117 - 224

Fln protein: VLICELCKVGDMKGASQLLHEMLDEGLGFDNISYDAVIDGYCKKQNTVEAMKFFNQILQRGCQPNISTYNILISGLVNEGRVGKGIKLQDYMLNKGSAPDLTTYNLLISGLCKEGDM

Protein Length: 118

Fln nts: TGTTTTAATTTGCGAACTTTGCAAAGTTGGGGATATGAAGGGGGCTTCACAACTATTACATGAAATGCTGGATGAGGGTTTAGGTTTTGATAATATTAGCTACGATGCTGTGATTGATGGTTATTGCAAGAAGCAGAATACTGTTGAAGCTATGAAGTTCTTCAACCAAATTCTGCAGAGAGGTTGTCAACCAAATATCTCAACCTACAACATTTTGATTAGTGGGCTTGTCAATGAAGGCAGAGTCGGTAAGGGGATTAAGCTGCAAGATTATATGCTGAATAAAGGCTCTGCCCCAGACTTGACAACTTATAACTTGTTAATCAGTGGGCTGTGCAAAGAAGGAGATATGC

Fln Alignment:

sp_v1.1_unigene45536___LICELCKVGDMKGASQLLHEMLDEGLGFDNISYDAVIDGYCKKQNTVEAMKFFNQILQRGCQPNISTYNILISGLVNEGRVGKGIKLQDYMLNKGSAPDLTTYNLLISGLCKEG
D5AAE3_______________LIFGLSKVAKVDEAKKFLKLMVRAGHPPDVITYTSLMNGMCRKGDAMGALALLEEMQQSVCQPDGCTYNTLMHGLCMCQHLHQALKLYEVLKSKEVDLESGTYAAFLKALCRAG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain