SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45533

Length: 397 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene45533
ATTGGGGAAGTCAATGTTGCTCACTGTAAGGATATTGTGAAACAAGCAAAGTTTGAATGCTTTGATAGAGAACCTTCAAAGGGGAACAAAAAGGAAAATGACAGAGAGCTTGTTGGTGAATCTGATTTCAAAAAAGGGCAAAATACTTCTGTGAGCAAAGATCACGTTTCAAATATTGTTGGTACTCAGCCTCTGCCAGCACAGACTCCCACTCAGGATCCTCCATTGGGACTAGCTGCTCCTGTTATGATTAATGAAAACTGGGTTTGCTGTGATTTATGTGAAAAATGGCGCTTGCTTCCAGTTGGAGTAGAACCCTCTTCTCTTCCCAAAAAATGGCTCTGCCGTATGCTCTCTTGGCTGCCTGGTATGAATCGCTGTGATGTCCCTGAGCAAG

Ace file of the UniGene sp_v1.1_unigene45533

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc ion binding	-	-	4.0e-17	55%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	45%
Blast2go	zinc ion binding protein	-	-	6.63528e-21	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, CW-type	IPR011124	-	6.63528e-21	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HPZ9

Fln msg: Distance to subject end: 954 aas, your sequence is shorter than subject: 132 - 1620

Fln protein: IGEVNVAHCKDIVKQAKFECFDREPSKGNKKENDRELVGESDFKKGQNTSVSKDHVSNIVGTQPLPAQTPTQDPPLGLAAPVMINENWVCCDLCEKWRLLPVGVEPSSLPKKWLCRMLSWLPGMNRCDVPEQ

Protein Length: 133

Fln nts: ATTGGGGAAGTCAATGTTGCTCACTGTAAGGATATTGTGAAACAAGCAAAGTTTGAATGCTTTGATAGAGAACCTTCAAAGGGGAACAAAAAGGAAAATGACAGAGAGCTTGTTGGTGAATCTGATTTCAAAAAAGGGCAAAATACTTCTGTGAGCAAAGATCACGTTTCAAATATTGTTGGTACTCAGCCTCTGCCAGCACAGACTCCCACTCAGGATCCTCCATTGGGACTAGCTGCTCCTGTTATGATTAATGAAAACTGGGTTTGCTGTGATTTATGTGAAAAATGGCGCTTGCTTCCAGTTGGAGTAGAACCCTCTTCTCTTCCCAAAAAATGGCTCTGCCGTATGCTCTCTTGGCTGCCTGGTATGAATCGCTGTGATGTCCCTGAGCAAG

Fln Alignment:

sp_v1.1_unigene45533___ELVGESDFKKGQNTSVSKDHVSNIVGTQPLPAQTPTQDPPLGLAAPVMINENWVCCDLCEKWRLLPVGVEPSSLPKKWLCRMLSWLPGMNRCDVPEQ
F6HPZ9_______________EMPSDDRLKESDMPPTSGAYPKAATNTLPPTGNGPNSNAAPAAVAPVVIEENWVCCDKCQKWRLLPIGINPDHLPEKWLCSMLSWLPGMNRCSISEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain