SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45518

Length: 308 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene45518
CACAACAAAAGGTGATGTTTATAGTTATGGAATAGTGCTATTGGAGATGCTCGCAAGAAAGAAACCCACCCATCACCTGTTTGTAGAAGGAATGGATTTGAAAAAATGGGTGAGTAATAGTTTTCCAAATCAACTAGAAAAAGTGGTAGACAAAAGTCTACTGAAAAGTAGTAACACAAATACTACGGAAGAAGATAAAAAACTAATGTGCCTGGGTCAACTCATAAGAATGGGTTTGCTATGCACACAACTATCCCCTCAGAGAAGACCTAATATGATAGATGTTGTAGACACATTAGAAAGCATTC

Ace file of the UniGene sp_v1.1_unigene45518

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	protein	-	-	1.54326e-30	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	1.54326e-30	67%
Blast2go	Protein kinase-like domain	IPR011009	-	1.54326e-30	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW30

Fln msg: Distance to subject end: 40 aas, your sequence is shorter than subject: 102 - 247

Fln protein: TTKGDVYSYGIVLLEMLARKKPTHHLFVEGMDLKKWVSNSFPNQLEKVVDKSLLKSSNTNTTEEDKKLMCLGQLIRMGLLCTQLSPQRRPNMIDVVDTLESI

Protein Length: 103

Fln nts: CACAACAAAAGGTGATGTTTATAGTTATGGAATAGTGCTATTGGAGATGCTCGCAAGAAAGAAACCCACCCATCACCTGTTTGTAGAAGGAATGGATTTGAAAAAATGGGTGAGTAATAGTTTTCCAAATCAACTAGAAAAAGTGGTAGACAAAAGTCTACTGAAAAGTAGTAACACAAATACTACGGAAGAAGATAAAAAACTAATGTGCCTGGGTCAACTCATAAGAATGGGTTTGCTATGCACACAACTATCCCCTCAGAGAAGACCTAATATGATAGATGTTGTAGACACATTAGAAAGCATTC

Fln Alignment:

sp_v1.1_unigene45518___TTKGDVYSYGIVLLEMLARKKPTHHLFVEGMDLKKWVSNSFPNQLEKVVDKSLLKSSNTNTTEEDKKLMCLGQLIRMGLLCTQLSPQRRPNMIDVVDTLESI
A9NW30_______________TTKGDVYSYGIVLLEMLTGKKPTDNMFVEGMDLQKWVGNSFPNQLGEIVDNSLLRRT-TTSNQVDKDLNCLSQSITMGLLCTKDAPKERPTMMDIVGTLQSI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain