SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45512

Length: 284 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene45512
TACAGAGCATGAAATGATCAGGCAGGTGTGGCGGATCGATAAAGATGAAACTGCTTCTTCATTTGCAATTATGAGGTTCAATTTGCTACAGCTCTTTGTCAAAAACAATCGTGATGATCATCGCAGGCAACTCATAGTTGACTTGCAGCCTCCTAGATTTGACAGTGGAGCAATCCTTAGTCAGGACCCTGCAGTTTCATATGTCAGATCTTCAACGGATCTGAATGATGATCAACGCCGTGCTATACTTAAGATACTTTCTGCAAAGGACTATGCACTCATTT

Ace file of the UniGene sp_v1.1_unigene45512 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA replication helicase dna2, putative; K10742 DNA replication ATP-dependent helicase Dna2 [EC:3.6.1.-]	-	-	5.0e-27	63%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	61%
Blast2go	dna replication helicase	-	-	1.58532e-27	81%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	5.0e-27	63%

Source	KEGGs	Term	e value	Identity
AutoFact	Purine metabolism	00230	5.0e-27	63%
AutoFact	Lipopolysaccharide biosynthesis	00540	5.0e-27	63%
AutoFact	Folate biosynthesis	00790	5.0e-27	63%
AutoFact	Metabolic pathways	01100	5.0e-27	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5CBF3

Fln msg: Distance to subject end: 430 aas, your sequence is shorter than subject: 94 - 705

Fln protein: TEHEMIRQVWRIDKDETASSFAIMRFNLLQLFVKNNRDDHRRQLIVDLQPPRFDSGAILSQDPAVSYVRSSTDLNDDQRRAILKILSAKDYALI

Protein Length: 95

Fln nts: TACAGAGCATGAAATGATCAGGCAGGTGTGGCGGATCGATAAAGATGAAACTGCTTCTTCATTTGCAATTATGAGGTTCAATTTGCTACAGCTCTTTGTCAAAAACAATCGTGATGATCATCGCAGGCAACTCATAGTTGACTTGCAGCCTCCTAGATTTGACAGTGGAGCAATCCTTAGTCAGGACCCTGCAGTTTCATATGTCAGATCTTCAACGGATCTGAATGATGATCAACGCCGTGCTATACTTAAGATACTTTCTGCAAAGGACTATGCACTCATTT

Fln Alignment:

sp_v1.1_unigene45512___EHEMIRQVWRIDKDETASSFAIMRFNLLQLFVKNNRDDHRRQLIVDLQPPRFDSGAILSQDPAVSYVRSSTDLNDDQRRAILKILSAKDYALI
A5CBF3_______________EQDLLGEVFRIBKDEIVTSFAVMRFNLIQLFLQSMQSSHLRKMIVDLEVPRFDGGCIFSQDPAISYIRSEKSLNNDQRQAILKILTAKDYALI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain