SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45479

Length: 489 nt

UniGene Fasta

>sp_v1.1_unigene45479
GGAAGTGATCAGAGTACAATGTTTGATGACGTTCATGTGCTTAACACAAACACTTTACAGTGGAACAGTCCAGTTNTAAAGGGTTCNGTTGAAGTTAGATGCAGGAGCACTCATGCTGCAGTTTTGCACCCTTTAGAGAGCAGAGCCATTATGATTCATGGAGGTTATGGAGATTATAGAAATAATGATCCTCACTGGTTGGGGGATCTTTCTCTTCTTCATACAGGTAAACAGATTCATTGGAGTGGAATGCATTGAATCCTGGTGGAAGAGTCCCATGTGCAAGAGGTTACCATTCCTTGACTACTGTTGGAGCATATGGTGTTCTATTCGGGGGGAAAGGTGATGCTGGAATTGTCAAAGAAGATTGCTTGAGCATATATGATGTAATGAAAAATAAATGGATCATTCCTAAAGTTCAAGGAGATGTCCCATTAGCACGTTCAAATCATGCAGCCACTTTGATGGATCCTGATTTAATTATTATTC

Ace file of the UniGene sp_v1.1_unigene45479

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	kelch repeat protein, putative	-	-	1.0e-08	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	predicted protein [Physcomitrella patens subsp. patens]	-	-	2.33496e-38	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Kelch-type beta propeller	IPR015915	-	2.33496e-38	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPX6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 312 aas, your sequence is shorter than subject: 162 - 665

Fln protein: K*SEYNV**RSCA*HKHFTVEQSSYKGFR*S*MQEHSCCSFAPFREQSHYDSWRLWRL*K**SSLVGGSFSSSYR*TDSLEWNALNPGGRVPCARGYHSLTTVGAYGVLFGGKGDAGIVKEDCLSIYDVMKNKWIIPKVQGDVPLARSNHAATLMDPDLIII

Protein Length: 163

Fln nts: GGAAGTGATCAGAGTACAATGTTTGATGACGTTCATGTGCTTAACACAAACACTTTACAGTGGAACAGTCCAGTTaTAAAGGGTTCcGTTGAAGTTAGATGCAGGAGCACTCATGCTGCAGTTTTGCACCCTTTAGAGAGCAGAGCCATTATGATTCATGGAGGTTATGGAGATTATAGAAATAATGATCCTCACTGGTTGGGGGATCTTTCTCTTCTTCATACAGGTAAACAGATTCATTGGAGTGGAATGCATTGAATCCTGGTGGAAGAGTCCCATGTGCAAGAGGTTACCATTCCTTGACTACTGTTGGAGCATATGGTGTTCTATTCGGGGGGAAAGGTGATGCTGGAATTGTCAAAGAAGATTGCTTGAGCATATATGATGTAATGAAAAATAAATGGATCATTCCTAAAGTTCAAGGAGATGTCCCATTAGCACGTTCAAATCATGCAGCCACTTTGATGGATCCTGATTTAATTATTATTC

Fln Alignment:

sp_v1.1_unigene45479___TDSLEWNALNPGGRVPCARGYHSLTTVGAYGVLFGGKGDAGIVKEDCLSIYDVMKNKWIIPKVQGDVPLARSNHAATL
C0PPX6_______________TESCTWCVLKSYGKAPIARGGQSVTLVGSSLVMFGGEDSMRSLLND-LNILDLETMTWDAIEAVGTPPSPRSDHTATV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain