SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45474

Length: 375 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene45474
CCCAGTCGACGTTCCGCAAAGCATAGATAATAGCATCATCTCCACAGTTGGTCTCGGGTTGCGTCCATGCCCTACTGGGAAGACCTGCGCAGGCCCCAACGGAACGATGCTTACCGCAAGTATGAACAACATATCATTTACATTGCCCACGACCGCTCTGCTTCAAGCTAATTATTTCGGCATTAATGGCGTCTTTACAACCGATTTTCCTTCAAATCCTGCGATTACATTTAACTACACGGGAGATAATATACCCCTAAGTCTCTGGACTCCTGTACGTGCAACAAAAGTGAAAGTACTGGAATACAATTCTACAGTGCAGCTGGTATATCAGACAACAAACATCTTCGTGGCAGAGAACCATCCGATGCATCT

Ace file of the UniGene sp_v1.1_unigene45474 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Laccase n=1 Tax=Pinus taeda RepID=Q9AUI5_PINTA	-	-	7.0e-38	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	laccase-like multicopper oxidase 90	-	-	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cupredoxin	IPR008972	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRA7

Fln msg: Distance to subject end: 95 aas, your sequence is shorter than subject: 124 - 570

Fln protein: PVDVPQSIDNSIISTVGLGLRPCPTGKTCAGPNGTMLTASMNNISFTLPTTALLQANYFGINGVFTTDFPSNPAITFNYTGDNIPLSLWTPVRATKVKVLEYNSTVQLVYQTTNIFVAENHPMH

Protein Length: 125

Fln nts: CCCAGTCGACGTTCCGCAAAGCATAGATAATAGCATCATCTCCACAGTTGGTCTCGGGTTGCGTCCATGCCCTACTGGGAAGACCTGCGCAGGCCCCAACGGAACGATGCTTACCGCAAGTATGAACAACATATCATTTACATTGCCCACGACCGCTCTGCTTCAAGCTAATTATTTCGGCATTAATGGCGTCTTTACAACCGATTTTCCTTCAAATCCTGCGATTACATTTAACTACACGGGAGATAATATACCCCTAAGTCTCTGGACTCCTGTACGTGCAACAAAAGTGAAAGTACTGGAATACAATTCTACAGTGCAGCTGGTATATCAGACAACAAACATCTTCGTGGCAGAGAACCATCCGATGCATCT

Fln Alignment:

sp_v1.1_unigene45474___PVDVPQSIDNSIISTVGLGLRPCPTGKTCAGPNGTMLTASMNNISFTLPTTALLQANYFGINGVFTTDFPSNPAITFNYTGDNIPLSLWTPVRATKVKVLEYNSTVQLVYQTTNIFVAENHPMH
C0PRA7_______________PVEVPQTVHKSFISTVGLGLLPCETGNTCEGPNGTRLSASMNNVSFVDPTIAILQANYFGINGVFSTDFPSKPPHKFNYTGDDIPRNLWFPLPATKVKVLNYNATVQLVFQSTNIFVAENHPMH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain