SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45378

Length: 470 nt

UniGene Fasta

>sp_v1.1_unigene45378
ATGGGGGATCTCAAGACTAGAATTTGAGATCTCAAAGGCAAGAATGGAGGGACTGAGGCTATTCTGGATCGGCTTGCTTTCAATTTATCTTCTGATTGTTGCAGGAGCTTCTGCAAATATAGGTAGAAGCAGCTTTCCAAAGGGCTTCAAATTCGGAGCTGGCTCATCTGCTTATCAGGTGGAAGGAGCTTCTCATGACGGTGGGAAAGGACCCAGCATTTGGGATACATTCTCACATATTCCAGTAAAATTGCCGATGGAAAGAATGGGGATGTTGCAGTAGATCAATACCACCGCTATAAGGAAGATGTTCAGCTTCTCAAATACATGGGAATGGACGTGTATCGTTTTTCATTTCCTGGCCACGCATATTTCCGCGTAAGTTGAATTAAAGAACTGTGATATCTGTATAAATAGCTCTACAATGGATTTTAAGTAACCATTGAACTCCATGATTCTCTCATTTCCAC

Ace file of the UniGene sp_v1.1_unigene45378

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-glucosidase D2 n=1 Tax=Lotus japonicus RepID=B2ZUU1_LOTJA	-	-	3.0e-23	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	beta-glucosidase d2	-	-	3.97759e-24	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	3.97759e-24	73%
Blast2go	apoplast	GO:0048046	Cellular Component	3.97759e-24	73%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVG8

Fln msg: Overlapping hits, possible frame ERROR between 253 and 247, and overlapping frame ERROR between 354 and 348, Unexpected STOP codon at 3' end. Distance to subject end: 350 aas, your sequence is shorter than subject: 117 - 477

Fln protein: MEGLRLFWIGLLSIYLLIVAGASANIGRSSFPKGFKFGAGSSAYQVEGASHDGGKGPSIWDTFSHIPxxxxDGKNGDVAVDQYHRYKEDVQLLKYMGMDVxxxxxSWPRIFPRKLN*

Protein Length: 118

Fln nts: ATGGGGGATCTCAAGACTAGAATTTGAGATCTCAAAGGCAAGA_-_ATGGAGGGACTGAGGCTATTCTGGATCGGCTTGCTTTCAATTTATCTTCTGATTGTTGCAGGAGCTTCTGCAAATATAGGTAGAAGCAGCTTTCCAAAGGGCTTCAAATTCGGAGCTGGCTCATCTGCTTATCAGGTGGAAGGAGCTTCTCATGACGGTGGGAAAGGACCCAGCATTTGGGATACATTCTCACATATTCCAxxxxxxxxxxxxGATGGAAAGAATGGGGATGTTGCAGTAGATCAATACCACCGCTATAAGGAAGATGTTCAGCTTCTCAAATACATGGGAATGGACGTGTAxxxxxxxxxxxxTTCCTGGCCACGCATATTTCCGCGTAAGTTGAATTAAAGAACTGTGATATCTGTATAAATAGCTCTACAATGGATTTTAAGTAACCATTGAACTCCATGATTCTCTCATTTCCAC

Fln Alignment:

sp_v1.1_unigene45378___IGRSSFPKGFKFGAGSSAYQVEGASHDGGKGPSIWDTFSHIPVxxADGKNGDVAVDQYHRYKEDVQLLKYMGMDVYRxxISWPRIFPR
A9NVG8_______________VRRSDFPPGFMFGIATSAYQCEGAAKEGGKGPSIWDSFSRTPGxxLDGSNGDVAVDQYHRYKEDVKLMKDMGVDTYRxxISWPRIFPK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain