SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45286

Length: 290 nt

UniGene Fasta

>sp_v1.1_unigene45286
TGCCTGAAAGAGATGTAGCGTCATGGAATACCATGATTGCAGGATATGCGCAGAATGGGAGCATGGAAGATGCAAACCAACTCTTTGACAGGATGCCTGAAAAGATGTGATCTCGTGGAATACAATGATTGCAGGGTATGCCCAGATTGGGCTTGGGGAAGAGGCCATGAAATTTTTCTGCCAAATGCAGCGTGTGGGGATGAGGCCAATTCAGACTACCTTTACTAGTCTGCTCAGTGCATCTTCCAGCCTAGCAAGTATTGAACAGGGCAAGCAGCATCATACCTGCA

Ace file of the UniGene sp_v1.1_unigene45286

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein, putative	-	-	3.0e-13	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	pentatricopeptide repeat-containing	-	-	1.43918e-15	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structure and overlapping frame ERROR between 223 and 104, Distance to subject end: 190 aas, your sequence is shorter than subject: 98 - 644

Fln protein: PERDVASWNTMIAGYAQNGSMEDANQLFDRMPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFTSLLSASSSLASIEQGKQHHTC

Protein Length: 99

Fln nts: TGCCTGAAAGAGATGTAGCGTCATGGAATACCATGATTGCAGGATATGCGCAGAATGGGAGCATGGAAGATGCAAACCAACTCTTTGACAGGATGCCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTTTACTAGTCTGCTCAGTGCATCTTCCAGCCTAGCAAGTATTGAACAGGGCAAGCAGCATCATACCTGCA

Fln Alignment:

sp_v1.1_unigene45286___xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
B8LLJ0_______________xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain