SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45237

Length: 338 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene45237
GCCCGAATCGAGTGCAGGCAAGGAAGCACAGGGATTTTTGGTACAGAAATTGGGGCACAATGGAAAACTTACTGCGCTTTATCTTGGGTCTTTTTGGAAATATTACAGCTTTTGCTTTGTTTCTGTCACCAGTGATCACATTCTATAAAGTATACAAGAAAGGTTCCACAGAGGAATTCTCTGGCATTCCATACGTAGTCACTATCCAAAATTGTCTTCTGTTTGCTTGGTATGGCTTCCTTCATCACATCCAACAATATCCTGATTTGTTCCCCCTTCATGTAACAGAGGAAAATCCTAATACTGCTCATAGCAGGCATGGCTCTTTCACTGCAGTT

Ace file of the UniGene sp_v1.1_unigene45237 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nodulin MtN3 family protein [Arabidopsis thaliana] gb\|AAM65929.1\| unknown [Arabidopsis thaliana] gb\|AAO42204.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63896.1\| unknown protein [Arabidopsis thaliana]	-	-	1.0e-12	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	seven-transmembrane-domain protein 1	-	-	2.02101e-14	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RAG1-activating protein-1-related	IPR004316	-	2.02101e-14	77%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ39

Fln msg: Distance to subject end: 168 aas, your sequence is shorter than subject: 93 - 260

Fln protein: MENLLRFILGLFGNITAFALFLSPVITFYKVYKKGSTEEFSGIPYVVTIQNCLLFAWYGFLHHIQQYPDLFPLHVTEENPNTAHSRHGSFTAV

Protein Length: 94

Fln nts: GCCCGAATCGAGTGCAGGCAAGGAAGCACAGGGATTTTTGGTACAGAAATTGGGGCACA_-_ATGGAAAACTTACTGCGCTTTATCTTGGGTCTTTTTGGAAATATTACAGCTTTTGCTTTGTTTCTGTCACCAGTGATCACATTCTATAAAGTATACAAGAAAGGTTCCACAGAGGAATTCTCTGGCATTCCATACGTAGTCACTATCCAAAATTGTCTTCTGTTTGCTTGGTATGGCTTCCTTCATCACATCCAACAATATCCTGATTTGTTCCCCCTTCATGTAACAGAGGAAAATCCTAATACTGCTCATAGCAGGCATGGCTCTTTCACTGCAGTT

Fln Alignment:

sp_v1.1_unigene45237___LLRFILGLFGNITAFALFLSPVITFYKVYKKGSTEEFSGIPYVVTIQNCLLFAWYG
A9NQ39_______________IAHFIFGIFGNITALTLFLAPLITFWTIIKNKSTEQFSGFPYVSTLLNCLLSAWYG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain