SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene45064

Length: 481 nt

UniGene Fasta

>sp_v1.1_unigene45064
CCATCAACGGATATATCAGTATATGCAGGCTGTCGTGGATGAAATTGTCCTGAGGCATGTAGATTCACATAAGGCACCAAGCTGTTGGAATCTACAAAAGCTTTTGGATGAATTTCACGAGATTTCAGACAGAGCATTCGTTGATAAATTTGCTGGTGTCACTGAAGAAACACTTGCAGCATCTCTAGAACACCTTCATCAAATGAAAAAGAGGAACCTTGATACTTTTCACCTTCCAGGCCTACCGGCACCTCCAGATGCATTGAAAGGAATACGTTCAAAGGCTTTTTCTTTCAAGCGTTGGCTTATGCTTACGTCAGATGGATCAGTGATGTCTGGAAAGTACCAAGACAATGCCAATCTTCTTCGTAAATACTTGGGAGATTTTTTGATTGCTTCGTACATACAAGTAGTCAGAGACTCTTGCTATGATTAATACATATATTCAAGAAGTAGAGAGAGCCATTGCTGTGAAAGCCTT

Ace file of the UniGene sp_v1.1_unigene45064

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein translocase subunit secA (Fragment) n=2 Tax=Vitis vinifera RepID=E0CR18_VITVI	-	-	9.0e-39	55%
FL-Next	sp=Protein translocase subunit secA; Vitis vinifera (Grape).	-	-	0.0	55%
Blast2go	preprotein translocase seca-like protein	-	-	1.75758e-38	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6H0I5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 71 aas, your sequence is shorter than subject: 145 - 1058

Fln protein: HQRIYQYMQAVVDEIVLRHVDSHKAPSCWNLQKLLDEFHEISDRAFVDKFAGVTEETLAASLEHLHQMKKRNLDTFHLPGLPAPPDALKGIRSKAFSFKRWLMLTSDGSVMSGKYQDNANLLRKYLGDFLIASYIQVVRDSCYD*

Protein Length: 146

Fln nts: CCATCAACGGATATATCAGTATATGCAGGCTGTCGTGGATGAAATTGTCCTGAGGCATGTAGATTCACATAAGGCACCAAGCTGTTGGAATCTACAAAAGCTTTTGGATGAATTTCACGAGATTTCAGACAGAGCATTCGTTGATAAATTTGCTGGTGTCACTGAAGAAACACTTGCAGCATCTCTAGAACACCTTCATCAAATGAAAAAGAGGAACCTTGATACTTTTCACCTTCCAGGCCTACCGGCACCTCCAGATGCATTGAAAGGAATACGTTCAAAGGCTTTTTCTTTCAAGCGTTGGCTTATGCTTACGTCAGATGGATCAGTGATGTCTGGAAAGTACCAAGACAATGCCAATCTTCTTCGTAAATACTTGGGAGATTTTTTGATTGCTTCGTACATACAAGTAGTCAGAGACTCTTGCTATGATTAATACATATATTCAAGAAGTAGAGAGAGCCATTGCTGTGAAAGCCTT

Fln Alignment:

sp_v1.1_unigene45064___QRIYQYMQAVVDEIVLRHVDSHKAPSCWNLQKLLDEFHEISDRAFVDKFAGVTEETLAASLEHLHQMKKRNLDTFHLPGLPAPPDALKGIRSKAFSFKRWLMLTSDGSVMSGKYQDNANLLRKYLGDFLIASYIQVVRDSCYD
F6H0I5_______________QHVFQYMQAVVDEIVFGNVNALKHPSKWNLGKLLKEFIGISGRLLDDSFVGISEETLLKALAQLHELSSVDINNFYLPNLPTPPNAFRGIRRKTSSLKRWLAICSDDSARDGRYRATANLLRKYLGDFLIASYLDAVQESGYD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain