SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44928

Length: 365 nt

UniGene Fasta

>sp_v1.1_unigene44928
CGTCGTGACCTTGGCTGTCACTCAATTTGGCCCCATCGCGATGCTGACATCAGAGGGCGTTTGCAAAGTTTCTACGCTGACCCGGTTGTATTCAAGATGGACGGCTCGGTACGCGACAACAGTGTGATGTTGGGAAGCTCTTCGTCGTTTCCAATGTACGACAACGACTTTGGATGGGGAAGACCGGTGGGTGCAAGGAGTGGGTGGGCCAACAAGTTTGATGGAAAGGTATCTGCGTATCCTGCTAGAGTAGCCGGAGGTGTAGATTTAGAGATTTGTCTCCTGCCTCCTTTCATGGCCGCCCTGGATACTGATCCACAGTTTCTGTCCCTATTTGTAATTAGCAGGCTATTTAAGCTGATGAA

Ace file of the UniGene sp_v1.1_unigene44928

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transferase family protein	-	-	6.0e-21	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	transferase family protein	-	-	3.42288e-38	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transferase	IPR003480	-	3.42288e-38	66%
Blast2go	Chloramphenicol acetyltransferase-like domain	IPR023213	-	3.42288e-38	66%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS40

Fln msg: STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 121 - 440

Fln protein: RRDLGCHSIWPHRDADIRGRLQSFYADPVVFKMDGSVRDNSVMLGSSSSFPMYDNDFGWGRPVGARSGWANKFDGKVSAYPARVAGGVDLEICLLPPFMAALDTDPQFLSLFVISRLFKLM

Protein Length: 122

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGGCCCCATCGCGATGCTGACATCAGAGGGCGTTTGCAAAGTTTCTACGCTGACCCGGTTGTATTCAAGATGGACGGCTCGGTACGCGACAACAGTGTGATGTTGGGAAGCTCTTCGTCGTTTCCAATGTACGACAACGACTTTGGATGGGGAAGACCGGTGGGTGCAAGGAGTGGGTGGGCCAACAAGTTTGATGGAAAGGTATCTGCGTATCCTGCTAGAGTAGCCGGAGGTGTAGATTTAGAGATTTGTCTCCTGCCTCCTTTCATGGCCGCCCTGGATACTGATCCACAGTTTCTGTCCCTATTTGTAATTAGCAGGCTATTTAAGCTGATGAA

Fln Alignment:

sp_v1.1_unigene44928___IWPHRDADIRGRLQSFYADPVVFKMDGSVRDNSVMLGSSSSFPMYDNDFGWGRPVGARSGWANKFDGKVSAYPARV-AGGVDLEICLLPPFMAALDTDPQFL
B8LS40_______________IWPHRDGNIRAELQKYKQRPTVVKLDRTIRDNSVMMGSSPRFPMYDNDFGWGRPVGVRSGWANKFDGKMSAYPEREGGGGVDVEICLMPAFMAAMETDPQFL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain