SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44883

Length: 415 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene44883
TCAGTTGACTGGAAGCATACCAAATTCTATAGGGAATTGTTCAAAATCATAGTACTCAATCTAAGCATTAACAAGTTGAGTGGAAGTGTGCCAGTAGAGTTGGGTAAGCTACCCTTACTTGAACGTGTATACTTGCACTCTAATCAGCTTGGTAGTGGCACTGCTACAACTATGCCATTTCTTGAAGCTCTTACCAATTGTTCACACCTAAAAGACATAGTCTTGTACGACAATAGACTAAGTGGTGTCTTACCCCTTTCCATAGGTAAACTTTCTACTAATTTGTCTTATTTGTCTTTATCAATAAATATGATAGAAGGAAAAATCCCTCCACATATAGGCAATCTTAGTAGCCTAACCTTATTAAATTTAACTGGAAATCTTTTAACCGGTAGCATTCCATCTTTAAAAAACC

Ace file of the UniGene sp_v1.1_unigene44883

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] emb\|CAB61955.1\| receptor kinase-like protein [Arabidopsis thaliana]	-	-	9.0e-13	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	protein	-	-	7.913e-19	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	7.913e-19	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Separated hits, possible frame ERROR between 43 and 52, Distance to subject end: 172 aas, your sequence is shorter than subject: 138 - 551

Fln protein: QLTGSIPNSIGNCxxxxVLNLSINKLSGSVPVELGKLPLLERVYLHSNQLGSGTATTMPFLEALTNCSHLKDIVLYDNRLSGVLPLSIGKLSTNLSYLSLSINMIEGKIPPHIGNLSSLTLLNLTGNLLTGSIPSLKN

Protein Length: 139

Fln nts: TCAGTTGACTGGAAGCATACCAAATTCTATAGGGAATTGTTCxxxxxxxxxAGTACTCAATCTAAGCATTAACAAGTTGAGTGGAAGTGTGCCAGTAGAGTTGGGTAAGCTACCCTTACTTGAACGTGTATACTTGCACTCTAATCAGCTTGGTAGTGGCACTGCTACAACTATGCCATTTCTTGAAGCTCTTACCAATTGTTCACACCTAAAAGACATAGTCTTGTACGACAATAGACTAAGTGGTGTCTTACCCCTTTCCATAGGTAAACTTTCTACTAATTTGTCTTATTTGTCTTTATCAATAAATATGATAGAAGGAAAAATCCCTCCACATATAGGCAATCTTAGTAGCCTAACCTTATTAAATTTAACTGGAAATCTTTTAACCGGTAGCATTCCATCTTTAAAAAACC

Fln Alignment:

sp_v1.1_unigene44883___QLTGSIPNSIGNCSxxxVLNLSINKLSGSVPVELGKLPLLERVYLHSNQLGSGTATTMPFLEALTNCSHLKDIVLYDNRLSGVLPLSIGKLSTNLSYLSLSINMIEGKIPPHI
B8LRW5_______________KLTGSIPASFGNMSxxxVLDLTDNQLTGTVPVELGRLFRLERLFLRRNQLVSGSTTTLPILTALSNCPFLEQIHLGANHLTGTLLSSIQQLSTQLSVFDLSHNEIGGKIPPEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain