SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44875

Length: 554 nt

UniGene Fasta

>sp_v1.1_unigene44875
GGTTAGTGGTCACAAATTTTAGCCCACTTTTCTCCTATTCCGTCCCAATCCAATCCAGGCTGATGGCTATTCAAACGGGCTGTATATTGGCTTTCTGTAGTGGCTAGTTTCTCTGCCTCAGCTATGATTCTTCATTTAAACAGAGCAACACCTGCTGATTCAACATTTTAAGCCTGCGGGGTAGCAATGAAGAGTGGCTGGCGAGGAACAGAAGCATTCAAATGGATGGGCTTTGTCACTGCCATATGGCTGCAGGTAATCAATGGAACCAACTTCGATTTCTCTGATTATTCCTCGGTTCTGAAGGAAGTATTGGACATCGACCAGGTCCAGCTCAACAATCTTGCGGTGGCCTCAGATCTAGGCAAGGCCCTGGGCTGGTTATCAGGCCTCGCTTCTCTTTATTTGCCTTTGTGGACTGTGCTCCTGATTGCCGGCTGCTTGGGGTTAGTGGGCTATGGAGTCCAGTGGCTATCGCTGGTCTCGAAGATTTCTCCTTTGGCATACTGGCAGGCATTTCTTCTCTGTATTTTGGCGGGCAACAGCATCTGCTG

Ace file of the UniGene sp_v1.1_unigene44875

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nodulin-related	-	-	4.0e-32	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	protein	-	-	2.24845e-32	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nodulin-like	IPR010658	-	2.24845e-32	69%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: Distance to subject end: 499 aas, your sequence is shorter than subject: 122 - 626

Fln protein: MKSGWRGTEAFKWMGFVTAIWLQVINGTNFDFSDYSSVLKEVLDIDQVQLNNLAVASDLGKALGWLSGLASLYLPLWTVLLIAGCLGLVGYGVQWLSLVSKISPLAYWQAFLLCILAGNSIC

Protein Length: 123

Fln nts: GGTTAGTGGTCACAAATTTTAGCCCACTTTTCTCCTATTCCGTCCCAATCCAATCCAGGCTGATGGCTATTCAAACGGGCTGTATATTGGCTTTCTGTAGTGGCTAGTTTCTCTGCCTCAGCTATGATTCTTCATTTAAACAGAGCAACACCTGCTGATTCAACATTTTAAGCCTGCGGGGTAGCA_-_ATGAAGAGTGGCTGGCGAGGAACAGAAGCATTCAAATGGATGGGCTTTGTCACTGCCATATGGCTGCAGGTAATCAATGGAACCAACTTCGATTTCTCTGATTATTCCTCGGTTCTGAAGGAAGTATTGGACATCGACCAGGTCCAGCTCAACAATCTTGCGGTGGCCTCAGATCTAGGCAAGGCCCTGGGCTGGTTATCAGGCCTCGCTTCTCTTTATTTGCCTTTGTGGACTGTGCTCCTGATTGCCGGCTGCTTGGGGTTAGTGGGCTATGGAGTCCAGTGGCTATCGCTGGTCTCGAAGATTTCTCCTTTGGCATACTGGCAGGCATTTCTTCTCTGTATTTTGGCGGGCAACAGCATCTGCTG

Fln Alignment:

sp_v1.1_unigene44875___GVAMKSGWRGTEAFKWMGFVTAIWLQVINGTNFDFSDYSSVLKEVLDIDQVQLNNLAVASDLGKALGWLSGLASLYLPLWTVLLIAGCLGLVGYGVQWLSLVSKISPLAYWQAFLLCILAGNS
B8LRH5_______________GVAHSPSRRSGSVIKWVGFVTAIWVQAIAGNNYTFSNYSVALKSILDVNQVQLNNLSVAKDVGKAFGLVAGFASDYLPAWLILLIGSLEGFLGYGAQWLVLSQRIRPLPYWQMCIFLCMGGNS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain