SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44859

Length: 440 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene44859
CTCTGATGAAACTGAGGACGAGTATGCTTTGAGTGAAGGAGGGTCTCCCTCTACTGTTTTGCACTTCTCCAATGTTAAGTAGTCCATCATCAGATAACTCCGACTCAGGTCAGATGAATAACAAGTTTAATTCAAGCAAGGAGAAGTACTATTTGGCAGCTAGCAAACAGATGGTTGGCATTTTTCTCTGTATTTGGGTACGTAGTGATTTGAAACAACATGTACGAAATTTGAAAGTTTCATGCGTTGGACGTGGGTTGATGGGTTACCTTGGCAACAAGGGTTCCATCTCTATTAGCATGCTGCTCCATCAAACAAGTTTCTGTTTTGTATGTTGTCATTTGACCTCTGGTGAGAAAGAAGGTGACGAGATCCGGAGGAATTATGATGTTTTGGAAATTTTGAAGAAGACAAACTTTCCACAGATTCGCAAGTTCTCA

Ace file of the UniGene sp_v1.1_unigene44859

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative inositol polyphosphate 5'-phosphatase n=1 Tax=Arabidopsis thaliana RepID=Q9SKZ8_ARATH	-	-	9.99995e-41	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Blast2go	type i inositol- -trisphosphate 5-phosphatase cvp2	-	-	4.30563e-41	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	leaf vascular tissue pattern formation	GO:0010305	Biological Process	4.30563e-41	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Endonuclease/exonuclease/phosphatase	IPR005135	-	4.30563e-41	89%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADM7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 237 aas, your sequence is shorter than subject: 146 - 462

Fln protein: LMKLRTSML*VKEGLPLLFCTSPMLSSPSSDNSDSGQMNNKFNSSKEKYYLAASKQMVGIFLCIWVRSDLKQHVRNLKVSCVGRGLMGYLGNKGSISISMLLHQTSFCFVCCHLTSGEKEGDEIRRNYDVLEILKKTNFPQIRKFS

Protein Length: 147

Fln nts: CTCTGATGAAACTGAGGACGAGTATGCTTTGAGTGAAGGAGGGTCTCCCTCTACTGTTTTGCACTTCTCCAATGTTAAGTAGTCCATCATCAGATAACTCCGACTCAGGTCAGATGAATAACAAGTTTAATTCAAGCAAGGAGAAGTACTATTTGGCAGCTAGCAAACAGATGGTTGGCATTTTTCTCTGTATTTGGGTACGTAGTGATTTGAAACAACATGTACGAAATTTGAAAGTTTCATGCGTTGGACGTGGGTTGATGGGTTACCTTGGCAACAAGGGTTCCATCTCTATTAGCATGCTGCTCCATCAAACAAGTTTCTGTTTTGTATGTTGTCATTTGACCTCTGGTGAGAAAGAAGGTGACGAGATCCGGAGGAATTATGATGTTTTGGAAATTTTGAAGAAGACAAACTTTCCACAGATTCGCAAGTTCTCA

Fln Alignment:

sp_v1.1_unigene44859___AASKQMVGIFLCIWVRSDLKQHVRNLKVSCVGRGLMGYLGNKGSISISMLLHQTSFCFVCCHLTSGEKEGDEI-RRNYDVLEILKKTNF
D5ADM7_______________AGSRQLAGLLVAVWVRKDLCPYIGEVDVGAVACGLGRTIGNKGAVALKMRVFRRILCVINCHFAA---HADAVARRNADFEYVYRNLTF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain