SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44767

Length: 280 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene44767
TGCCAATTGAGCCACTCCCTGAAAGTGTTCAAATTCATCTCCTAGAACAGTATCCTGTTTTGGATTCCATCCAAAGATATTTATGGCCTCGATTATGTACTCTTGATCAACGAACCACTATATGAACTCCACTGCCAATTGAGCCACTCCCTGAAAGTGTTCAAATTCATCTCCTAGAACAGTATCCTGTTTTGGATTCCATCCAAAGATATTTATGGCCTCGATTATGTACTCTTGATCAACGAACACTATATGAACTCCACTACCAATTGATTACTTT

Ace file of the UniGene sp_v1.1_unigene44767 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	Isoform 2 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME	-	-	0.0	82%
Blast2go	dna glycosylase	-	-	7.66575e-14	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-(apurinic or apyrimidinic site) lyase.	EC:4.2.99.18	-	7.66575e-14	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	7.66575e-14	94%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	7.66575e-14	94%
Blast2go	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	7.66575e-14	94%
Blast2go	DNA methylation	GO:0006306	Biological Process	7.66575e-14	94%
Blast2go	DNA demethylation	GO:0080111	Biological Process	7.66575e-14	94%
Blast2go	negative regulation of chromatin silencing	GO:0031936	Biological Process	7.66575e-14	94%
Blast2go	DNA-(apurinic or apyrimidinic site) lyase activity	GO:0003906	Molecular Function	7.66575e-14	94%
Blast2go	DNA N-glycosylase activity	GO:0019104	Molecular Function	7.66575e-14	94%
Blast2go	protein binding	GO:0005515	Molecular Function	7.66575e-14	94%
Blast2go	polar nucleus	GO:0043078	Cellular Component	7.66575e-14	94%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8LK56-2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 363 aas, your sequence is shorter than subject: 92 - 674

Fln protein: PIEPLPESVQIHLLEQYPVLDSIQRYLWPRLCTLDQRTTI*TPLPIEPLPESVQIHLLEQYPVLDSIQRYLWPRLCTLDQRTLYELHYQLIT

Protein Length: 93

Fln nts: TGCCAATTGAGCCACTCCCTGAAAGTGTTCAAATTCATCTCCTAGAACAGTATCCTGTTTTGGATTCCATCCAAAGATATTTATGGCCTCGATTATGTACTCTTGATCAACGAACCACTATATGAACTCCACTGCCAATTGAGCCACTCCCTGAAAGTGTTCAAATTCATCTCCTAGAACAGTATCCTGTTTTGGATTCCATCCAAAGATATTTATGGCCTCGATTATGTACTCTTGATCAACGAACACTATATGAACTCCACTACCAATTGATTACTTT

Fln Alignment:

sp_v1.1_unigene44767___SVQIHLLEQYPVLDSIQRYLWPRLCTLDQRTLYELHYQLIT
Q8LK56-2_____________SLQLHLLELYPVLESIQKFLWPRLCKLDQRTLYELHYQLIT

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain