SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44720

Length: 557 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene44720
GGATTCTCAAATAGATTTTAACCAGACGAAGTAAGGAAATGGGGCCTCATGGACTACGCTGATTACAGCTTATGGCAGAACCGGCCATGGTAAGGAGGCCTCGGGAATGTTTTACGAAATGCAACGAACTGGTATTGTGCTACCAGCATATTCCAACCTGGCAGGTGTTAAAGAGATTCATGAAGAGATAGGTAGAACTGAGTTTGAATCTAATGTCTTTATGGAGTGCGCTCTCCTTGACATGTATGCGAAAATGCAGAATGGACACGTTGCAGACGCCTTGGAGTTTGAAAAGATGCCTGAACAAAATGTGGCCTTCTGGTATTCGATGATTTTGGGGTATGCACAGAATGTGCTTGTGAATGAAGTCTTGGAGCACTTTGAGAGAAGATCGCAGTCGAGTGTGGTGTCATGGACGGCGATGGTTGCAGAATATATGCAGAATGGGCATGGTGAACAGGCTTTGAAGATTTTTCGACGGATGCTGGCAGTTTTAAAATCCAATTCAAAAACCTTTGCGATTGTTTTTGCTCCGCGTGTCAACTTGGCAGCTCTGG

Ace file of the UniGene sp_v1.1_unigene44720

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RV98_RICCO	-	-	1.0e-16	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Blast2go	pentatricopeptide repeat-containing	-	-	8.4289e-27	52%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	8.4289e-27	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: Distance to subject end: 240 aas, your sequence is shorter than subject: 185 - 644

Fln protein: DSQIDFNQTK*GNGASWTTLITAYGRTGHGKEASGMFYEMQRTGIVLPAYSNLAGVKEIHEEIGRTEFESNVFMECALLDMYAKMQNGHVADALEFEKMPEQNVAFWYSMILGYAQNVLVNEVLEHFERRSQSSVVSWTAMVAEYMQNGHGEQALKIFRRMLAVLKSNSKTFAIVFAPRVNLAAL

Protein Length: 186

Fln nts: GGATTCTCAAATAGATTTTAACCAGACGAAGTAAGGAAATGGGGCCTCATGGACTACGCTGATTACAGCTTATGGCAGAACCGGCCATGGTAAGGAGGCCTCGGGAATGTTTTACGAAATGCAACGAACTGGTATTGTGCTACCAGCATATTCCAACCTGGCAGGTGTTAAAGAGATTCATGAAGAGATAGGTAGAACTGAGTTTGAATCTAATGTCTTTATGGAGTGCGCTCTCCTTGACATGTATGCGAAAATGCAGAATGGACACGTTGCAGACGCCTTGGAGTTTGAAAAGATGCCTGAACAAAATGTGGCCTTCTGGTATTCGATGATTTTGGGGTATGCACAGAATGTGCTTGTGAATGAAGTCTTGGAGCACTTTGAGAGAAGATCGCAGTCGAGTGTGGTGTCATGGACGGCGATGGTTGCAGAATATATGCAGAATGGGCATGGTGAACAGGCTTTGAAGATTTTTCGACGGATGCTGGCAGTTTTAAAATCCAATTCAAAAACCTTTGCGATTGTTTTTGCTCCGCGTGTCAACTTGGCAGCTCTGG

Fln Alignment:

sp_v1.1_unigene44720___FNQTK*GNGASWTTLITAYGRTGHGKEASGMFYEMQRTGI---------VLPAYSNLAGVKEIHEEIGRTEFESNVFMECALLDMYAK-----------------------------MQNGHVADALE--------------------------------FEKMPEQNVAFWYSMILGY-------------------------------AQNVLVNEVLEHFERRSQSSVVSWTAMVAEYMQNGHGEQALKIFRRMLAV-LKSNSKTFAIVFAPRVNLAAL
B8LLJ0_______________FDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain