SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44713

Length: 342 nt

UniGene Fasta

>sp_v1.1_unigene44713
GTGCAGGTCAACCACCCCCACCTCCCCTTCCAGGGGCACGAGGACCTGGTGCTCCTCCACCACCTCCTCCACTTGGAAGAGGGAGAGGTGTACCCAATGCGCCTTCACAACCAGGTGGAAGGGGTCGTCCAACTGCAACATGTGGGCACCACTAGCCCCAAAGCGGGCATCTTTGAAGCCACTACATTGGGTTAAAGTTACAAGAGCAATGCAGGGCAGCCTGTGGGCAGATACTCAGAGACAGGAAGATCAGGCAAGGGCTCCAGAAATTGATATGTCTGAACTGGAAAGTCTTTTTTCAGCTACTGTGACATCATCCAATTCAGGAGGCACAGGAATTGG

Ace file of the UniGene sp_v1.1_unigene44713

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Drf_FH1 multi-domain protein	-	-	2.0e-09	65%
FL-Next	sp=Formin-like protein 3; Oryza sativa subsp. japonica (Rice).	-	-	0.0	73%
Blast2go	dna binding	-	-	8.1456e-19	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	8.1456e-19	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Actin-binding FH2	IPR015425	-	8.1456e-19	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7G6K7

Fln msg: Distance to subject end: 339 aas, your sequence is shorter than subject: 113 - 1234

Fln protein: CRSTTPTSPSRGTRTWCSSTTSSTWKRERCTQCAFTTRWKGSSNCNMWAPLAPKRASLKPLHWVKVTRAMQGSLWADTQRQEDQARAPEIDMSELESLFSATVTSSNSGGTGI

Protein Length: 114

Fln nts: GTGCAGGTCAACCACCCCCACCTCCCCTTCCAGGGGCACGAGGACCTGGTGCTCCTCCACCACCTCCTCCACTTGGAAGAGGGAGAGGTGTACCCAATGCGCCTTCACAACCAGGTGGAAGGGGTCGTCCAACTGCAACATGTGGGCACCACTAGCCCCAAAGCGGGCATCTTTGAAGCCACTACATTGGGTTAAAGTTACAAGAGCAATGCAGGGCAGCCTGTGGGCAGATACTCAGAGACAGGAAGATCAGGCAAGGGCTCCAGAAATTGATATGTCTGAACTGGAAAGTCTTTTTTCAGCTACTGTGACATCATCCAATTCAGGAGGCACAGGAATTGG

Fln Alignment:

sp_v1.1_unigene44713___PKRASLKPLHWVKVTRAMQGSLWADTQRQEDQARAPEIDMSELESLFSATV--TSSNSGGT
Q7G6K7_______________PKKASLKPLHWVKVTRAMQGSLWEDAQKQGNQARAPDIDLSELESLFSTAVATNASEKGGT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain