SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44659

Length: 556 nt

UniGene Fasta

>sp_v1.1_unigene44659
TTCAAAGCTCTTCACATTACAGGAGGTGGAGAATGGAATTAAGACACTGAAAACATGAAAGGCAAAGGACTTGGTTGAACTTCAAGCAGAGTATCTAAAATGGGGAATGAACGCTTTTGCACTGCACATCATGAAAATATTCAACAACATCATTCAACAAGGATTCCCAAGAGACTGGACAACTAGCCTAACAATACCCCTTTTTAAAAGTGGAGACATTAATAATCCATCCAACTATAGAACAATTATGATCAATCCTTTGTTTGCAAAGCTTTTCGGCAGCATGGTAGAAGACATAATTAGCAAGTGGGCAGAAGTAAAAGTAAAGAGGGCAAGAGGACAAGTGGGTTTTAGGTCGAAACATTCTACAGTGGATCATGGCATCACGTTGAGACACATTTTTGAAAAGGTTTGGGAGGACAAAGAAGAAGTATTTTGCTGCTTTGTTGACTTCAAAAAAGCATTTGACACAGTCCCTAGGGATAAGTTGTGGCGTAGAATGGAAGAATTTGAAATTTCTGTGCATTATAGAGTCATTGTCCATAGAATTTATGAA

Ace file of the UniGene sp_v1.1_unigene44659

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to endonuclease-reverse transcriptase, partial n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4958A	-	-	2.0e-20	34%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	40%
Blast2go	endonuclease-reverse transcriptase	-	-	2.01088e-20	51%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Reverse transcriptase	IPR000477	-	2.01088e-20	51%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: D8QXY9

Fln msg: Distance to subject end: 25 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 166 - 203

Fln protein: KAKDLVELQAEYLKWGMNAFALHIMKIFNNIIQQGFPRDWTTSLTIPLFKSGDINNPSNYRTIMINPLFAKLFGSMVEDIISKWAEVKVKRARGQVGFRSKHSTVDHGITLRHIFEKVWEDKEEVFCCFVDFKKAFDTVPRDKLWRRMEEFEISVHYRVIVHRIYE

Protein Length: 167

Fln nts: TTCAAAGCTCTTCACATTACAGGAGGTGGAGAATGGAATTAAGACACTGAAAAC_-_ATGAAAGGCAAAGGACTTGGTTGAACTTCAAGCAGAGTATCTAAAATGGGGAATGAACGCTTTTGCACTGCACATCATGAAAATATTCAACAACATCATTCAACAAGGATTCCCAAGAGACTGGACAACTAGCCTAACAATACCCCTTTTTAAAAGTGGAGACATTAATAATCCATCCAACTATAGAACAATTATGATCAATCCTTTGTTTGCAAAGCTTTTCGGCAGCATGGTAGAAGACATAATTAGCAAGTGGGCAGAAGTAAAAGTAAAGAGGGCAAGAGGACAAGTGGGTTTTAGGTCGAAACATTCTACAGTGGATCATGGCATCACGTTGAGACACATTTTTGAAAAGGTTTGGGAGGACAAAGAAGAAGTATTTTGCTGCTTTGTTGACTTCAAAAAAGCATTTGACACAGTCCCTAGGGATAAGTTGTGGCGTAGAATGGAAGAATTTGAAATTTCTGTGCATTATAGAGTCATTGTCCATAGAATTTATGAA

Fln Alignment:

sp_v1.1_unigene44659___IKTLKT*KAKDLVELQAEYLKWGMNAFALHIM-KIFNNIIQQGFPRDWTTSLTIPLFKSGDINNPSNYRTIMINPLFAKLFGSMVEDIISKWAEVKVKRARGQVGFRSKHSTVDHGITL
D8QXY9_______________IQSLPRKKAADVYGFTAELLQALDPTWLAPILCQLFHEIIQHGFPQTWNINRVVPIYKAGDSALTSNYRTIMISTIFVKLLAKVVEQRLVSWMEDKGCRARGQARFQPHYSCIDHLVTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain