SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44648

Length: 401 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene44648
CGCCCCTGTTATTGGTCAGTGCATCGTGGAGTTGATGGTCAACCCTCCCAAGCCGGGCGAGCCCTCACACGAGCTTTACAAGAAAGAGTACGATGGCATCTTCACCGGTCTTCAAGAGCGTGCTACCGCCCTTCACAAGGCTTTCTCTCAGATGGAAGGAGTTGAGTGCGCTGAACCCCAAGGTTCCATGTACCTCTTCCCCACCATCAACCTGCCCGAGAAGGCCGCCGAGGCTGCCAAGGCAGAGGGTCGAAGCCCAGATGAGTTCTACTGCATGCGTCTCCTCGAGGCCACTGGTATCTGTGTCGTTCCCGGCTCAGGCTTTGGTCAGAAAGAGGGTACCCTGCACTTCAGAACGACCTTCCTCGCGCCCGGCACCGAGTGGGTTGGCAGCATCGTGA

Ace file of the UniGene sp_v1.1_unigene44648

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to alanine aminotransferase; K00814 alanine transaminase [EC:2.6.1.2]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	alanine aminotransferase	-	-	90%

Source	ECs	Term	Type	e value	Identity
AutoFact	Alanine transaminase.	EC:2.6.1.2	-	0.0	79%

Source	KEGGs	Term	Identity
AutoFact	Alanine, aspartate and glutamate metabolism	00250	79%
AutoFact	Carbon fixation in photosynthetic organisms	00710	79%
AutoFact	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	79%
AutoFact	Metabolic pathways	01100	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	0.0	90%
Blast2go	Pyridoxal phosphate-dependent transferase, major domain	IPR015424	-	0.0	90%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACH7

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 133 - 329

Fln protein: APVIGQCIVELMVNPPKPGEPSHELYKKEYDGIFTGLQERATALHKAFSQMEGVECAEPQGSMYLFPTINLPEKAAEAAKAEGRSPDEFYCMRLLEATGICVVPGSGFGQKEGTLHFRTTFLAPGTEWVGSIV

Protein Length: 134

Fln nts: CGCCCCTGTTATTGGTCAGTGCATCGTGGAGTTGATGGTCAACCCTCCCAAGCCGGGCGAGCCCTCACACGAGCTTTACAAGAAAGAGTACGATGGCATCTTCACCGGTCTTCAAGAGCGTGCTACCGCCCTTCACAAGGCTTTCTCTCAGATGGAAGGAGTTGAGTGCGCTGAACCCCAAGGTTCCATGTACCTCTTCCCCACCATCAACCTGCCCGAGAAGGCCGCCGAGGCTGCCAAGGCAGAGGGTCGAAGCCCAGATGAGTTCTACTGCATGCGTCTCCTCGAGGCCACTGGTATCTGTGTCGTTCCCGGCTCAGGCTTTGGTCAGAAAGAGGGTACCCTGCACTTCAGAACGACCTTCCTCGCGCCCGGCACCGAGTGGGTTGGCAGCATCGTGA

Fln Alignment:

sp_v1.1_unigene44648___VIGQCIVELMVNPPKPGEPSHELYKKEYDGIFTGLQERATALHKAFSQMEGVECAEPQGSMYLFPTINLPXXXXXXXXXXGRSPDEFYCMRLLEATGICVVPGSGFGQKEGTLHFRTTFLAP
D5ACH7_______________ISGQILASLVMNPPKSGDESFEMFFAERDGILSSLARRAKTLVDALNQLEGVTCNEAEGAMYVFPRIHLPQQAIKAAEAVNMVPDAFYSQRLLEATGIVTVPGSGFGQVPGTWHFRSTILPP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain