SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44633

Length: 549 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene44633
ATCATAAAAATAATCAATGGCACAATTACACTCCCCATTAAAAACACTACTACTCCCACTACCCCAGTAGTCAACAACACTACCCCTACCACTCCCACTACCCCAGTAGTCAATGACACCACTCCTACCACTCCCACTACCCCAGTAGTCAACGACACCACTCCTACCACTCCCACAACTCCCACTACCCCAGTTGAAAACACTACTAACACTACCACTCCTGCTCCTACTCCTGTCAAGTACGCCAAGAATGATGTCAACATGGCTACCTTACCTGACGTTTGCTTGACTATTCACAACCAAGAAAGAATGGCTGTTGGTGTTGCTAACTTGACTTGGTCTACCTCTTTGGCTGCTTCTGCTCAAGCTTGGGCTGACAATATGGCTAAGAATGGTTTCAGACACAGTGGAAAGACCGGTGAAAACATTGCCAGCTCTACTTATAGCACCAAGACTCTTACCAGACTTCTTGGACTCTGGACTAAGGAAAAGAGCCATTACATTCCCGGATGCAACTATGGCAAATGCAGTACCACCTCTGCTGAAGTC

Ace file of the UniGene sp_v1.1_unigene44633

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pathogenesis related protein, putative n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C333_ACAM1	-	-	9.0e-07	34%
FL-Next	sp=Pathogenesis-related protein 1A; Nicotiana tabacum (Common tobacco).	-	-	0.0	36%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Allergen V5/Tpx-1-related	IPR001283	-	0.0	-
Blast2go	CAP domain	IPR014044	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: P08299

Fln msg: Distance to subject end: 41 aas, No stop codon before M and low homology subject, your sequence is shorter than subject: 96 - 168

Fln protein: MATLPDVCLTIHNQERMAVGVANLTWSTSLAASAQAWADNMAKNGFRHSGKTGENIASSTYSTKTLTRLLGLWTKEKSHYIPGCNYGKCSTTSAEV

Protein Length: 97

Fln nts: ATCATAAAAATAATCAATGGCACAATTACACTCCCCATTAAAAACACTACTACTCCCACTACCCCAGTAGTCAACAACACTACCCCTACCACTCCCACTACCCCAGTAGTCAATGACACCACTCCTACCACTCCCACTACCCCAGTAGTCAACGACACCACTCCTACCACTCCCACAACTCCCACTACCCCAGTTGAAAACACTACTAACACTACCACTCCTGCTCCTACTCCTGTCAAGTACGCCAAGAATGATGTCAAC_-_ATGGCTACCTTACCTGACGTTTGCTTGACTATTCACAACCAAGAAAGAATGGCTGTTGGTGTTGCTAACTTGACTTGGTCTACCTCTTTGGCTGCTTCTGCTCAAGCTTGGGCTGACAATATGGCTAAGAATGGTTTCAGACACAGTGGAAAGACCGGTGAAAACATTGCCAGCTCTACTTATAGCACCAAGACTCTTACCAGACTTCTTGGACTCTGGACTAAGGAAAAGAGCCATTACATTCCCGGATGCAACTATGGCAAATGCAGTACCACCTCTGCTGAAGTC

Fln Alignment:

sp_v1.1_unigene44633___LTIHNQERMAVGVANLTWSTSLAASAQAWADNMAK--NGFRHSGKTGENIASSTYSTKTLTRLLGLWTKEKSHY
P08299_______________LDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHSHGQYGENLAEGSGDFMTAAKAVEMWVDEKQYY

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain