SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44628

Length: 517 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene44628
TGGACATTACAATGGCAACCGAAAGAATTTCTATCACAATTTCCATTTTAGTTCTGCTGATTGCTGGGGCATCAAATTCCTATTCCTATCCTGTGTCTGTGCAGGCAACCCCTGCGTATAGTCCTGCAGATGGATGGCATTGCGGGATTGCAGCCTGGGATGCATTACGGCTTTTGTCTCCCTGCTATGATTTCATCACCAATGGAGAAATCAGCAACGCCTCTCCACAGTGCTGCTCGGCTTTTAATACAATAGCGTATACTTACCAGATGTGCCTGTGCTTCATCTATGAGGACGCCATGGAGATATATGGAGATTTAATTAATCAATCACGAGCTTTCCTCCTCCCTGAACTCTGTAAAGTCCCTGTTCCGTCTATTTCTATTTGCGTAACGCGATATCAGGCAGATGTTCCCAATGCACCCATTCATCACTTTATTCCAGATCAGTCAGATGCTCCCAATGCACGCATGAGTGATTCTAGTTCAGTTCCGAATGAGCTTGCCAACCGACATCA

Ace file of the UniGene sp_v1.1_unigene44628 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Non-specific lipid-transfer protein n=2 Tax=Zea mays RepID=B6U4H7_MAIZE	-	-	1.0e-08	34%
FL-Next	sp=Non-specific lipid-transfer protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	0.0	-
Blast2go	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	IPR016140	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQX9

Fln msg: Distance to subject end: 26 aas, No stop codon before M and low homology subject,

Fln protein: MATERISITISILVLLIAGASNSYSYPVSVQATPAYSPADGWHCGIAAWDALRLLSPCYDFITNGEISNASPQCCSAFNTIAYTYQMCLCFIYEDAMEIYGDLINQSRAFLLPELCKVPVPSISICVTRYQADVPNAPIHHFIPDQSDAPNARMSDSSSVPNELANRH

Protein Length: 169

Fln nts: TGGACATTACA_-_ATGGCAACCGAAAGAATTTCTATCACAATTTCCATTTTAGTTCTGCTGATTGCTGGGGCATCAAATTCCTATTCCTATCCTGTGTCTGTGCAGGCAACCCCTGCGTATAGTCCTGCAGATGGATGGCATTGCGGGATTGCAGCCTGGGATGCATTACGGCTTTTGTCTCCCTGCTATGATTTCATCACCAATGGAGAAATCAGCAACGCCTCTCCACAGTGCTGCTCGGCTTTTAATACAATAGCGTATACTTACCAGATGTGCCTGTGCTTCATCTATGAGGACGCCATGGAGATATATGGAGATTTAATTAATCAATCACGAGCTTTCCTCCTCCCTGAACTCTGTAAAGTCCCTGTTCCGTCTATTTCTATTTGCGTAACGCGATATCAGGCAGATGTTCCCAATGCACCCATTCATCACTTTATTCCAGATCAGTCAGATGCTCCCAATGCACGCATGAGTGATTCTAGTTCAGTTCCGAATGAGCTTGCCAACCGACATCA

Fln Alignment:

sp_v1.1_unigene44628___ALRLLSPCYDFITNGEISNASPQCCSAFNTIAYTYQMCLCFIYEDAMEIYGDLINQSRAFLLPELCKVPVPSISICVTRYQADVPNAPI
C0PQX9_______________ALVSLAPCIGYVT-GSAPKPSDRCCSGLTNVVNTNPVCLCQLFSGGNNV-GVNVNQTLALAMPAACKVSTPPLSSCKA---AGVPVPPI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
70			33	66	0.997452
73	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain