SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44581

Length: 474 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene44581
ATGAGTGCAATAGTGGAGAGCTTGGGATTGCCCCATAAAAAATATATTGAAGAAAACGGTTTTAGCGATGACAGTAGCCAAGTTATGGTTCTCAATTACTTTCCTGCTTGTCCAGAACCAGAGCTTACCTTAGGCATGCCACCACATTCAGACTATGGTTGCCTTACCATTCTTTTACAGGATTCTGTTGGAGGTTTTCAGTTGCTGCACGATGGCCAGTGGAAGGCAGTACGACCATTGGCCAACTCTTTCATAGTAAACATCGGTGATCACGTAGAGGTACGTACTTACTRATACTCACTCAGTAATTTTTATTCATTGCTTAATATACCCATTGCTTTATATACTTTCAGATTCTAAGCAATGGAAGATACAAGAGTGTGGTGCATCGAGTGGTGGTCAACTCAGAAAAATTTCGTATTTCTGTGGCGGCTTTGATGACCATGCCGTTCGAACAAAAAATTGCTCCTGCGC

Ace file of the UniGene sp_v1.1_unigene44581

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	2OG-FeII_Oxy domain containing protein	-	-	6.0e-18	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	gibberellin 20 oxidase 2	-	-	6.52288e-35	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	6.52288e-35	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQA3

Fln msg: Separated hits, possible frame ERROR between 282 and 345, Distance to subject end: 46 aas, your sequence is shorter than subject: 158 - 361

Fln protein: MSAIVESLGLPHKKYIEENGFSDDSSQVMVLNYFPACPEPELTLGMPPHSDYGCLTILLQDSVGGFQLLHDGQWKAVRPLANSFIVNIGDHVExxxxxxxxxxxxxxxxxxxxxxYFQILSNGRYKSVVHRVVVNSEKFRISVAALMTMPFEQKIAPA

Protein Length: 159

Fln nts: ATGAGTGCAATAGTGGAGAGCTTGGGATTGCCCCATAAAAAATATATTGAAGAAAACGGTTTTAGCGATGACAGTAGCCAAGTTATGGTTCTCAATTACTTTCCTGCTTGTCCAGAACCAGAGCTTACCTTAGGCATGCCACCACATTCAGACTATGGTTGCCTTACCATTCTTTTACAGGATTCTGTTGGAGGTTTTCAGTTGCTGCACGATGGCCAGTGGAAGGCAGTACGACCATTGGCCAACTCTTTCATAGTAAACATCGGTGATCACGTAGAGGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATACTTTCAGATTCTAAGCAATGGAAGATACAAGAGTGTGGTGCATCGAGTGGTGGTCAACTCAGAAAAATTTCGTATTTCTGTGGCGGCTTTGATGACCATGCCGTTCGAACAAAAAATTGCTCCTGCGC

Fln Alignment:

sp_v1.1_unigene44581___MSAIVESLGLPHKKYIEENGFSDDSSQVMVLNYFPACPEPELTLGMPPHSDYGCLTILLQDSVGGFQLLHDGQWKAVRPLANSFIVNIGDHVEVxxxxxxxxxxxxxxxxxxxxxYFQILSNGRYKSVVHRVVVNSEKFRISVAALMTMPFEQKIAPA
A9NQA3_______________MGAISESLGLK-SDYIQT--VFKDGIQIGVLNFYPQCPEPDETMGIAPHSDHGGLTILLQNDVGGLQVRHEGRWVAVEPSPNAFVVNVSDHLEIxxxxxxxxxxxxxxxxxxxxxHLEIVSNGRYKSVEHRAVVNAERARISIAAPNGPAMDAPIFPA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain