SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44567

Length: 402 nt

UniGene Fasta

>sp_v1.1_unigene44567
GGAAGACAATTCAGTTTTATATAGCCTTGATTGATTCTGCTCATAGTCTGTGGGCCTGAGAGAAGAAATTGTTTCCTTGGGGTGAAGAGATCAGGCTAATTATGGGGCGGACACCCTGTTGTGAAAAAAATATTGGGCTGAAGAAGGGGCCATGGACACCTGAGGAGGATCAAAAGCTGATAGATTACATACAAAGCCATGGCCATGGTAGCTGGCGTGCCCTTCCTAAGCGAGCAGGGCTCTTGAGATGTGGAAAAAGTTGCAGGCTGAGATGGACCAACTATTTAAGACCTGATATAAAACGTGGACAGTTTTCATWTGAGGAAGAGCAGACTATAATTGAACTCCATGCTGTTCTTGGAAACAAGTGGTCTACTATAGCTGGGCATCTGCCTGGGGAGG

Ace file of the UniGene sp_v1.1_unigene44567

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	R2R3-MYB transcription factor MYB11 n=1 Tax=Picea glauca RepID=A5JYF5_PICGL	-	-	84%
FL-Next	tr=R2R3-MYB transcription factor MYB11; Picea glauca (White spruce) (Pinus glauca).	-	-	85%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	90%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	90%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	90%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	90%
Blast2go	response to salt stress	GO:0009651	Biological Process	90%

Source	InterPros	Term	Type	Identity
Blast2go	SANT/Myb domain	IPR001005	-	90%
Blast2go	Homeodomain-like	IPR009057	-	90%
Blast2go	Homeodomain-related	IPR012287	-	90%
Blast2go	Myb, DNA-binding	IPR014778	-	90%
Blast2go	Myb transcription factor	IPR015495	-	90%
Blast2go	Myb domain, DNA-binding	IPR017930	-	90%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A5JYF5

Fln msg: Distance to subject end: 400 aas, your sequence is shorter than subject: 100 - 499

Fln protein: MGRTPCCEKNIGLKKGPWTPEEDQKLIDYIQSHGHGSWRALPKRAGLLRCGKSCRLRWTNYLRPDIKRGQFSFEEEQTIIELHAVLGNKWSTIAGHLPGE

Protein Length: 101

Fln nts: GGAAGACAATTCAGTTTTATATAGCCTTGATTGATTCTGCTCATAGTCTGTGGGCCTGAGAGAAGAAATTGTTTCCTTGGGGTGAAGAGATCAGGCTAATT_-_ATGGGGCGGACACCCTGTTGTGAAAAAAATATTGGGCTGAAGAAGGGGCCATGGACACCTGAGGAGGATCAAAAGCTGATAGATTACATACAAAGCCATGGCCATGGTAGCTGGCGTGCCCTTCCTAAGCGAGCAGGGCTCTTGAGATGTGGAAAAAGTTGCAGGCTGAGATGGACCAACTATTTAAGACCTGATATAAAACGTGGACAGTTTTCATtTGAGGAAGAGCAGACTATAATTGAACTCCATGCTGTTCTTGGAAACAAGTGGTCTACTATAGCTGGGCATCTGCCTGGGGAGG

Fln Alignment:

sp_v1.1_unigene44567___MGRTPCCEKNIGLKKGPWTPEEDQKLIDYIQSHGHGSWRALPKRAGLLRCGKSCRLRWTNYLRPDIKRGQFSFEEEQTIIELHAVLGNKWSTIAGHLPG
A5JYF5_______________MGRAPCCDKD-GLKKGPWTPEEDQKLTDYIQRHGHGSWRTLPKHAGLLRCGKSCRLRWTNYLRPDIKRGKFSFEEEQTIVQLHGVLGNKWSAIASHLPG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain