SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44448

Length: 379 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene44448
CAGATGAAGTTGAGAGTAAGAGCAGCGGGAACAAGATCAGAGGATATCCATCATTACGATCAGTAAGAGAAGAAAACTCAGAGAATAATGGCAGCGGGAAGAGAAGATCAGTAATTAGAGAAAGGGATCTTAAAAACTGGCTCAGTGAACTCATTCAACTCAGCGATAGTGCTCATGCGCATGCCCGTGTCGATGAGGCAGACATTGGTGGCGCCGCTGAACAATTTCCGAGCACAACTATTTCAGAAGAGCATGTCAATAATAACAGTAGCTGCGTAGTTTGCTTGGATCCATTTGAAGTTGGCAAGGACGCACGTGAAATGCCATGCAATCATATCTTCCACAAGCATTGTATATACAAATGGATTAGCATGAACCC

Ace file of the UniGene sp_v1.1_unigene44448 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os05g0110000 protein n=2 Tax=Oryza sativa RepID=Q65XW6_ORYSJ	-	-	8.0e-13	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	ring-h2 finger protein	-	-	1.46858e-12	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	1.46858e-12	61%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	1.46858e-12	61%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	1.46858e-12	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NT04

Fln msg: Distance to subject end: 110 aas, your sequence is shorter than subject: 125 - 325

Fln protein: DEVESKSSGNKIRGYPSLRSVREENSENNGSGKRRSVIRERDLKNWLSELIQLSDSAHAHARVDEADIGGAAEQFPSTTISEEHVNNNSSCVVCLDPFEVGKDAREMPCNHIFHKHCIYKWISMN

Protein Length: 126

Fln nts: CAGATGAAGTTGAGAGTAAGAGCAGCGGGAACAAGATCAGAGGATATCCATCATTACGATCAGTAAGAGAAGAAAACTCAGAGAATAATGGCAGCGGGAAGAGAAGATCAGTAATTAGAGAAAGGGATCTTAAAAACTGGCTCAGTGAACTCATTCAACTCAGCGATAGTGCTCATGCGCATGCCCGTGTCGATGAGGCAGACATTGGTGGCGCCGCTGAACAATTTCCGAGCACAACTATTTCAGAAGAGCATGTCAATAATAACAGTAGCTGCGTAGTTTGCTTGGATCCATTTGAAGTTGGCAAGGACGCACGTGAAATGCCATGCAATCATATCTTCCACAAGCATTGTATATACAAATGGATTAGCATGAACCC

Fln Alignment:

sp_v1.1_unigene44448___AAEQFPSTTISEEHVNNNSSCVVCLDPFEVGKDAREMPCNHIFHKHCIYKWISMN
A9NT04_______________AVDAMPTIKINSRHLVNNSHCPVCKDRFEVGGEAREMPCKHIYHSDCILPWLAQH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain