SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44424

Length: 554 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene44424
GCTCATTCGACTTTCTTGGTTATAACTACTACACAACACATTATACCACCAGTAATCCCAATCCACCAAATCCACAGAAGACAGACTTTATCTTAGATGCCCGTTGTAATGTAACATATCAAGTAAATGGAGTGTACATTGGATCAGATGTATGCGGTTTGAGATTTTCCCCCTGTAAATTTTTCTCGAGTTGATTCGTAGACTTTGCAAAACATGTTGGCTGGAATTTATCTTTATACATGCTTGCACATACTTTCGCAGGAAGGTGTGAGCGATTTCAGGTCTTACCCAGCTGGACTAAGGGGCGTAATAAACTATACAAAGCACCGCTATAACAATCCCCCCATATACATCACTGAGACTGGATATGCTGATTTTGACAATGGCACGACCCTGCTTGAACGGGCATTGAACGATTCTGGGCGAATGAAGTACCATTCTGAACATTTGTCACACCTGCTTCAAGGCATAAAGGACGGAGCGGATGTCCGAGGTTATATAATTTGGTCTTTGATGGACAGCTTTGAGTGGTCGAGCGGTTATAATTATCGATT

Ace file of the UniGene sp_v1.1_unigene44424

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Beta-glucosidase 31 n=3 Tax=Arabidopsis RepID=BGL31_ARATH	-	-	2.0e-24	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	glycosyl hydrolase family 1 protein	-	-	1.0762e-42	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to other organism	GO:0051707	Biological Process	1.0762e-42	69%
Blast2go	catalytic activity	GO:0003824	Molecular Function	1.0762e-42	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 1	IPR001360	-	1.0762e-42	69%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	1.0762e-42	69%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	1.0762e-42	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ52

Fln msg: Separated hits, possible frame ERROR between 149 and 229, Distance to subject end: 28 aas, your sequence is shorter than subject: 184 - 407

Fln protein: SFDFLGYNYYTTHYTTSNPNPPNPQKTDFILDARCNVTYQVNGVYIGSxxxxxxxxxxxxxxxxxxxxxxxxxxxxYLYTCLHILSQEGVSDFRSYPAGLRGVINYTKHRYNNPPIYITETGYADFDNGTTLLERALNDSGRMKYHSEHLSHLLQGIKDGADVRGYIIWSLMDSFEWSSGYNYR

Protein Length: 185

Fln nts: GCTCATTCGACTTTCTTGGTTATAACTACTACACAACACATTATACCACCAGTAATCCCAATCCACCAAATCCACAGAAGACAGACTTTATCTTAGATGCCCGTTGTAATGTAACATATCAAGTAAATGGAGTGTACATTGGATCAGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTATCTTTATACATGCTTGCACATACTTTCGCAGGAAGGTGTGAGCGATTTCAGGTCTTACCCAGCTGGACTAAGGGGCGTAATAAACTATACAAAGCACCGCTATAACAATCCCCCCATATACATCACTGAGACTGGATATGCTGATTTTGACAATGGCACGACCCTGCTTGAACGGGCATTGAACGATTCTGGGCGAATGAAGTACCATTCTGAACATTTGTCACACCTGCTTCAAGGCATAAAGGACGGAGCGGATGTCCGAGGTTATATAATTTGGTCTTTGATGGACAGCTTTGAGTGGTCGAGCGGTTATAATTATCGATT

Fln Alignment:

sp_v1.1_unigene44424___SFDFLGXXXXXXXXXXXXXXXXXXQKTDFILDARCNVTYQVNGVYIGSDxxxxxxxxxxxxxxxxxxxxxxxxxxxYLYTCLHILSQEGVSDFRSYPAGLRGVINYTKHRYNNPPIYITETGYADFDNGTTLLERALNDSGRMKYHSEHLSHLLQGIKDGADVRGYIIWSLMDSFEWSSGYNYR
B8LQ52_______________SFDFLGYNYYTTQYTISNPNPPNPLNTDYLLDARANLSYQVNGIYIGSDxxxxxxxxxxxxxxxxxxxxxxxxxxxYQVNGIYIGSDEGVSDFRSYPAGLRYALSCIKHRYNNPPIYITETGYVDFDNGTTPLEQALNDSKRVKYHSEHLSYLLKAIREGADVRGYLVWSLLDSFEWSSGYNYR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain