SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44403

Length: 372 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene44403
AGGGAGAGGAACTCCAGGATATGTTGCGCCAGAGGTGTGTGACAGTGATATGGGGCCTGTTACTGATAAATCCGATGTTTATAGTTTCGGTATGCTCTTGCTAGAGATTGCTGGGGGTAGAAAGAATATGGACTTTAGGGTGAGTCGTTCGAGTCGGCTGTACTTTCCTGAGTGGGCTTTCAAGATGCTTCAGAATGAGGAGTTGCCGATGAGATTGCGAGGTGAAATAGGAGGAGAACTTGAAGCAGAAGCGGAGGAGAATGGGAGGAAGCTGATGACTAAAGTTGGGTTGTGGTGTATTCAACACCAATCCAGGGATCGTCCGTGTATGAGTAGGGTTGTTCAAATGTTAGAGGGAAATGCAGACGACGT

Ace file of the UniGene sp_v1.1_unigene44403

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	receptor serine/threonine kinase, putative (EC:2.7.10.2)	-	-	3.0e-23	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	protein	-	-	2.8756e-24	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	2.8756e-24	63%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	2.8756e-24	63%
Blast2go	Protein kinase-like domain	IPR011009	-	2.8756e-24	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NM60

Fln msg: Distance to subject end: 40 aas, your sequence is shorter than subject: 123 - 431

Fln protein: GRGTPGYVAPEVCDSDMGPVTDKSDVYSFGMLLLEIAGGRKNMDFRVSRSSRLYFPEWAFKMLQNEELPMRLRGEIGGELEAEAEENGRKLMTKVGLWCIQHQSRDRPCMSRVVQMLEGNADD

Protein Length: 124

Fln nts: AGGGAGAGGAACTCCAGGATATGTTGCGCCAGAGGTGTGTGACAGTGATATGGGGCCTGTTACTGATAAATCCGATGTTTATAGTTTCGGTATGCTCTTGCTAGAGATTGCTGGGGGTAGAAAGAATATGGACTTTAGGGTGAGTCGTTCGAGTCGGCTGTACTTTCCTGAGTGGGCTTTCAAGATGCTTCAGAATGAGGAGTTGCCGATGAGATTGCGAGGTGAAATAGGAGGAGAACTTGAAGCAGAAGCGGAGGAGAATGGGAGGAAGCTGATGACTAAAGTTGGGTTGTGGTGTATTCAACACCAATCCAGGGATCGTCCGTGTATGAGTAGGGTTGTTCAAATGTTAGAGGGAAATGCAGACGACGT

Fln Alignment:

sp_v1.1_unigene44403___RGTPGYVAPEVCDSDMGPVTDKSDVYSFGMLLLEIAGGRKNMDFRVSRSSRLYFPEWAFKMLQNEELPMXXXXXXXXXXXXXXXXNGRKLMTKVGLWCIQHQSRDRPCMSRVVQMLEGNAD
A9NM60_______________RGTPGYMAPEWLLG--AGITSKSDVFSYGMVLLEIISGRRNVD-NTRDSDNWYFPSIAINKARQDKMEEIIETGLEMKRPEDLEEAYR--LIKTALWCVQSNSGLRPSMGTVVRILEGDLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain