SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44365

Length: 424 nt

UniGene Fasta

>sp_v1.1_unigene44365
CGTCGTGACCTTGGCTGTCACTCAGTTCACAAAGCTGTTACAAGAGATGGTATGGAGGTTGCAATGAAGATTCAATATCCTGGTGTGGCAGAGAGTATAGATAGTGACATAGAAAATGTTAAACGGCTTCTTGATTACACCAACCTCTTGCCAAACGGGCTCTATCTTGACCAAGCTATGAAGGTGGCAAAAGTGGAGCTTGCTAGGGAATGCAATTATGAGCTGGAAGCAGCAAACCAAAAACGTTTCCGCAAGCTTTTGTCTGGAGTAGATGGTTTTTATGTGCCCTTGGTCATAGACGAGATTTCCGGCAGGAGAGTTCTGTCCACAGAGCTCGTTACAGGAGTGTCAGTTGAAAAAGTTGCGCATCTTAATCAGGAGACCCGTGATTATGTGGGTAGAAAATTGCTAGAATTGGCACTAA

Ace file of the UniGene sp_v1.1_unigene44365

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATABC1 (ARABIDOPSIS THALIANA ABC TRANSPORTER 1); transporter [Arabidopsis thaliana] gb\|AAC72875.1\| Arabidopsis thaliana ABC1 protein (GB:AJ001158) emb\|CAB77736.1\| putative ABC transporter [Arabidopsis thaliana]	-	-	69%
FL-Next	Isoform 2 of Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic OS=Arabidopsis thaliana GN=At1g79600	-	-	28%
Blast2go	abc1 protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	cytochrome complex assembly	GO:0017004	Biological Process	80%
Blast2go	iron-sulfur cluster assembly	GO:0016226	Biological Process	80%
Blast2go	cellular iron ion homeostasis	GO:0006879	Biological Process	80%
Blast2go	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%
Blast2go	mitochondrial respiratory chain	GO:0005746	Cellular Component	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ABC-1	IPR004147	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9MA15-2

Fln msg: Distance to subject end: 351 aas, your sequence is shorter than subject: 141 - 569

Fln protein: RRDLGCHSVHKAVTRDGMEVAMKIQYPGVAESIDSDIENVKRLLDYTNLLPNGLYLDQAMKVAKVELARECNYELEAANQKRFRKLLSGVDGFYVPLVIDEISGRRVLSTELVTGVSVEKVAHLNQETRDYVGRKLLELAL

Protein Length: 142

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTCACAAAGCTGTTACAAGAGATGGTATGGAGGTTGCAATGAAGATTCAATATCCTGGTGTGGCAGAGAGTATAGATAGTGACATAGAAAATGTTAAACGGCTTCTTGATTACACCAACCTCTTGCCAAACGGGCTCTATCTTGACCAAGCTATGAAGGTGGCAAAAGTGGAGCTTGCTAGGGAATGCAATTATGAGCTGGAAGCAGCAAACCAAAAACGTTTCCGCAAGCTTTTGTCTGGAGTAGATGGTTTTTATGTGCCCTTGGTCATAGACGAGATTTCCGGCAGGAGAGTTCTGTCCACAGAGCTCGTTACAGGAGTGTCAGTTGAAAAAGTTGCGCATCTTAATCAGGAGACCCGTGATTATGTGGGTAGAAAATTGCTAGAATTGGCACTAA

Fln Alignment:

sp_v1.1_unigene44365___VHKAVTR-DGMEVAMKIQYPGVAESIDSDIENVKRLLDYTNLLPNGLYLDQAMKVAKV--ELARECNYELEAANQKRFRKLLSGVDGFYVPLVIDEISGRRVLSTELVTGVSVEKVAHLNQETRDYVGRKLLEL
Q9MA15-2_____________VYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLINKYVDFITTDVLTLIDEFACRVYQELNYVQEAQNARRFKKLYADKADVLVPDIFWDYTSRKVLTMEWVEGTKLNEQLAIESQ-----GLKVLDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain