SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44328

Length: 286 nt

UniGene Fasta

>sp_v1.1_unigene44328
GAAGGTTGAAAGGCAGAATGAAGCTGAGCTTAAAGAAACTATAAAAGTGCCTAAAGCTACATGGATGGCTGATGGTACTCACTGGCCAGGAACGTGGACAGTTGCCAGCAAGGAACATTCACGGGGAGACCATGCTGGAATCATTCAGGTTATGCTTAAACCTCCTAGTGATGAACCGCTTATGGCACTGTGGATGATAAAGTCATCGACTTTAGTGATGTGGATATCCGTTTGCCTATGCTAGTGTATGTATCACGTGAGAAACGGCCAGGGTATGATCACAACA

Ace file of the UniGene sp_v1.1_unigene44328

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cellulose synthase A catalytic subunit 3 [UDP-forming], putative (EC:2.4.1.12)	-	-	4.0e-34	73%
FL-Next	tr=Cellulose synthase catalytic subunit; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	0.0	48%
Blast2go	protein	-	-	9.24918e-34	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	root hair elongation	GO:0048767	Biological Process	9.24918e-34	84%
Blast2go	response to cold	GO:0009409	Biological Process	9.24918e-34	84%
Blast2go	pollen germination	GO:0009846	Biological Process	9.24918e-34	84%
Blast2go	transferase activity	GO:0016740	Molecular Function	9.24918e-34	84%
Blast2go	integral to Golgi membrane	GO:0030173	Cellular Component	9.24918e-34	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q6GUG6

Fln msg: Separated hits, possible frame ERROR between 157 and 232, Distance to subject end: 538 aas, your sequence is shorter than subject: 95 - 1084

Fln protein: KVERQNEAELKETIKVPKATWMADGTHWPGTWTVASKEHSRGDHAGIIQVMxxxxxxxxxxxxxxxxxxxxxxxxxxLPMLVYVSREKRPGYDHN

Protein Length: 96

Fln nts: GAAGGTTGAAAGGCAGAATGAAGCTGAGCTTAAAGAAACTATAAAAGTGCCTAAAGCTACATGGATGGCTGATGGTACTCACTGGCCAGGAACGTGGACAGTTGCCAGCAAGGAACATTCACGGGGAGACCATGCTGGAATCATTCAGGTTATGCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTGCCTATGCTAGTGTATGTATCACGTGAGAAACGGCCAGGGTATGATCACAACA

Fln Alignment:

sp_v1.1_unigene44328___KVPKATW-MADGTHWPGTWTVASKEHSRGDHAGIIQVMLxxxxxxxxxxxxxxxxxxxxxxxxxLPMLVYVSREKRPGYDHN
Q6GUG6_______________KVPKEGWTMQDGTPWPG--------NNTRDHPGMIQVFLxxxxxxxxxxxxxxxxxxxxxxxxxLPRLVYVSREKRPGFQHH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain