SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44313

Length: 351 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene44313
GTACACAAAACTCACTGCATCTCGATCTCTGGTCTATGCCGTCGCCCGTGCTTGCGACGGTGGTCATGTGAGTCGCAGAGATTGCGCTGGCGCGATTCTTTATTCTACGGAGAAGGCGGTTGAGGTTGCACTGGAGGCTATGCAATGCCTTGGCGGCAACGGGTATATCAATGAATATCCAACTGGAAGATTCCTTCGGGATGCTCGTCTGTATACCGTTGGCGCGGGTACGCAGGAGATCAGGAGGATGCTTATCGGACGAGAATTCAACAACGACTACAAGTCGTAGCTGTGTTCAGAGACGAACTTACTACTTCTGTGCGTACCGACGCCCAAGGCATTGCATATTTG

Ace file of the UniGene sp_v1.1_unigene44313

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Isovaleryl-CoA dehydrogenase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NEH1_COPC7	-	-	4.00001e-40	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	isovaleryl coenzyme a dehydrogenase	-	-	8.27498e-40	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Acyl-CoA dehydrogenase, conserved site	IPR006089	-	8.27498e-40	86%
Blast2go	Acyl-CoA oxidase/dehydrogenase, type 1	IPR006090	-	8.27498e-40	86%
Blast2go	Acyl-CoA dehydrogenase/oxidase C-terminal	IPR009075	-	8.27498e-40	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPF0

Fln msg: your sequence is shorter than subject: 96 - 227

Fln protein: YTKLTASRSLVYAVARACDGGHVSRRDCAGAILYSTEKAVEVALEAMQCLGGNGYINEYPTGRFLRDARLYTVGAGTQEIRRMLIGREFNNDYKS*

Protein Length: 97

Fln nts: GTACACAAAACTCACTGCATCTCGATCTCTGGTCTATGCCGTCGCCCGTGCTTGCGACGGTGGTCATGTGAGTCGCAGAGATTGCGCTGGCGCGATTCTTTATTCTACGGAGAAGGCGGTTGAGGTTGCACTGGAGGCTATGCAATGCCTTGGCGGCAACGGGTATATCAATGAATATCCAACTGGAAGATTCCTTCGGGATGCTCGTCTGTATACCGTTGGCGCGGGTACGCAGGAGATCAGGAGGATGCTTATCGGACGAGAATTCAACAACGACTACAAGTCGTAG___CTGTGTTCAGAGACGAACTTACTACTTCTGTGCGTACCGACGCCCAAGGCATTGCATATTTG

Fln Alignment:

sp_v1.1_unigene44313___YTKLTASRSLVYAVARACDGGHVSRRDCAGAILYSTEKAVEVALEAMQCLGGNGYINEYPTGRFLRDARLYTVGAGTQEIRRMLIGR
B8LPF0_______________YTALQSSRAFVYSVAKKCDNGEVDKKDCAGVILFAAENATQVALQAIQCLGGNGYVNEYPTGRLLRDAKLFEIGAGTSEIRRMLIGR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain