SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44307

Length: 463 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene44307
GCCATTCTTAGCAAGCCTAAGAGATGATATTCGCACCGGAGCTGATATTCATTCGATCGTTCAGACTTTGCTTGCCCCCATGTTGAGGACGAAAAACTTCTCATCCTCGGATAATGTAAAAAATGTGAAAGGATTTGGGAGCAAGTTGGCAGCAGATCAGAACGCCAAGGAAATAACCAAGTCGTTGGTTTCAAACAATGGGTCTTTAGATGCTTCTGTTGAAAGCTCATCAAATTATGCTGATAAGTGTATAGATAATGGTCATTTGCAGGGAAATTTGGCTTTTCAGCTATGGTTGGTAGATGACAAGAGTGTGACTAAAGAGGTTTCATCACAGAAGATAAACCAATTTCGATATCAAATACATGTACAAGGGTTCAAGTCTTTATAGACTGGTCAGAGAAAGAATTAGAGAAGTACGATACACATTATCTTGAAATTCTACCTGAAGTCTTCAAATCTG

Ace file of the UniGene sp_v1.1_unigene44307

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Populus trichocarpa RepID=B9HDU9_POPTR	-	-	7.0e-13	65%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase; subsp. trichocarpa).	-	-	0.0	27%
Blast2go	predicted protein [Populus trichocarpa]	-	-	1.28909e-12	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HDU9

Fln msg: Separated hits, possible frame ERROR between 235 and 331, Distance to subject end: 183 aas, your sequence is shorter than subject: 154 - 951

Fln protein: PFLASLRDDIRTGADIHSIVQTLLAPMLRTKNFSSSDNVKNVKGFGSKLAADQNAKEITKSLVSNNGSLDASVESSSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxITEDKPISISNTCTRVQVFIDWSEKELEKYDTHYLEILPEVFKS

Protein Length: 155

Fln nts: GCCATTCTTAGCAAGCCTAAGAGATGATATTCGCACCGGAGCTGATATTCATTCGATCGTTCAGACTTTGCTTGCCCCCATGTTGAGGACGAAAAACTTCTCATCCTCGGATAATGTAAAAAATGTGAAAGGATTTGGGAGCAAGTTGGCAGCAGATCAGAACGCCAAGGAAATAACCAAGTCGTTGGTTTCAAACAATGGGTCTTTAGATGCTTCTGTTGAAAGCTCATCAAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCATCACAGAAGATAAACCAATTTCGATATCAAATACATGTACAAGGGTTCAAGTCTTTATAGACTGGTCAGAGAAAGAATTAGAGAAGTACGATACACATTATCTTGAAATTCTACCTGAAGTCTTCAAATCTG

Fln Alignment:

sp_v1.1_unigene44307___RDDIRTGADIHSIVQTLLAPMLRTKNFSSSDNVKNVKGFGSKLAADQNAKEITKSLVSNNGSLDASVESSSNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxITEDKPISISNTCTRVQVFIDWSEKELEKYDTHYLEILPEVFK
B9HDU9_______________RDEVITRGDIQTVVNTMLSPLLRSESLRQADTSEPF----LSLAASEKRRDSSSGEACSN-SMSDSVNKDGNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVGEDKAIKLSSTSTSVLVYVDWSRELLEKYDTHYLENLPEVFK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain