SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44299

Length: 355 nt

Origin of reads: Biogeco_1 Biogeco_2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene44299
CTGTTGAAGACGTACTGGAGAATTTAGTTAGCTCAAATATAATAGGCAAAGGGTGTTCTGGCATCGTGTACAGGGTCCAAATTCCAAATGGAGACAGCATAGCTGTGAAAAGACTGTGGCCCTCAAAGAAATCCGGGCAACAGAGAGACTCTTTCGCAGCGGAGGTGAGGACTCTGGGTTCAATCCGCCATAGAAACATAGTGAGACTCTTGGGTTATTGCTCCAACCGCACAACCAAATTGCTCATGTATGATTACATGCCAAATGGAAGCCTCGGCGGATTGCTGCATGAAAAGAGGGGAATGCTGGAATGGGAAATCAGATACAACATAGTTTGGGAGCAGCACAAGGGCCT

Ace file of the UniGene sp_v1.1_unigene44299 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor protein kinase n=1 Tax=Pinus sylvestris RepID=Q9FEU2_PINSY	-	-	2.0e-40	68%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	68%
Blast2go	receptor protein kinase clavata1	-	-	2.83308e-40	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	2.83308e-40	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	2.83308e-40	74%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	2.83308e-40	74%
Blast2go	Protein kinase-like domain	IPR011009	-	2.83308e-40	74%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	2.83308e-40	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Distance to subject end: 234 aas, your sequence is shorter than subject: 117 - 1145

Fln protein: VEDVLENLVSSNIIGKGCSGIVYRVQIPNGDSIAVKRLWPSKKSGQQRDSFAAEVRTLGSIRHRNIVRLLGYCSNRTTKLLMYDYMPNGSLGGLLHEKRGMLEWEIRYNIVWEQHKG

Protein Length: 118

Fln nts: CTGTTGAAGACGTACTGGAGAATTTAGTTAGCTCAAATATAATAGGCAAAGGGTGTTCTGGCATCGTGTACAGGGTCCAAATTCCAAATGGAGACAGCATAGCTGTGAAAAGACTGTGGCCCTCAAAGAAATCCGGGCAACAGAGAGACTCTTTCGCAGCGGAGGTGAGGACTCTGGGTTCAATCCGCCATAGAAACATAGTGAGACTCTTGGGTTATTGCTCCAACCGCACAACCAAATTGCTCATGTATGATTACATGCCAAATGGAAGCCTCGGCGGATTGCTGCATGAAAAGAGGGGAATGCTGGAATGGGAAATCAGATACAACATAGTTTGGGAGCAGCACAAGGGCCT

Fln Alignment:

sp_v1.1_unigene44299___EDVLENLVSSNIIGKGCSGIVYRVQIPNGDSIAVKRLWPSKKSG----QQRDSFAAEVRTLGSIRHRNIVRLLGYCSNRTTKLLMYDYMPNGSLGGLLHEKRGMLEWEIRYNIVWEQHKG
Q9FEU2_______________DDVVNALVDSNIIGKGCSGVVYKAEMGNGDVIAVKKLWTGKESECEKVRERDSFSAEVNTLGAIRHRNIVRLLGCCTNGRSKLLMYDYMPNGSLGGLLHEKRSMLDWEIRYNIVLGVRRG

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
245		66	33		0.997454
279	66		33		0.997452
289			33	66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain