SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44290

Length: 528 nt

UniGene Fasta

>sp_v1.1_unigene44290
GTAGTTGCCAGGTCAATGGCTGGCATTACGGATCCAAAGAATGGGAATTTGCAATCGGGAGGCAGCCAAATGGCGACAGCCAAGACATTCGAGAAGCTCTGTATGATCCCTGAGGTGGAGTTATGATGCCCTCGGCAGGTATGACGTTAAGCTGCAATTGTGCTTTCTATTCTTAAGTGCCTTTTTTGAAGACCAGATCATCTGGTTCGAACAATCAATTGCGCTGTTTATAGGGGAAGGGCTAGTTGCAAGAAAGAATGTGCAAGATGAGCGTAGCTACGACCCATTTGAGGTGGGGAAAATTTACATCAACCTTTTAGCGGATCGTTGCTTGATCGAACCCACATTGAGGGACGTGGGTGGGTCGGTGGTGTATTTCAGGGTGCACGACGTCCTGCGTGATTTGGCAATACAAATCGCTGAGCGGGAAGAAAACTTCTACTGCCGGGCAGGTAAGGGTTTGGCAGCCTTAACTGAAGATGAATGTTCAGGACGCTTCTTCACGTGTTTTAAGAACTACAACAAATT

Ace file of the UniGene sp_v1.1_unigene44290

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative CC-NBS-LRR protein (Fragment) n=1 Tax=Pinus monticola RepID=A5WZ02_PINMO	-	-	3.0e-21	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	bed finger-nbs-lrr resistance protein	-	-	5.93378e-21	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLB4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 42 aas, your sequence is shorter than subject: 175 - 576

Fln protein: *LPGQWLALRIQRMGICNREAAKWRQPRHSRSSV*SLRWSYDALGRYDVKLQLCFLFLSAFFEDQIIWFEQSIALFIGEGLVARKNVQDERSYDPFEVGKIYINLLADRCLIEPTLRDVGGSVVYFRVHDVLRDLAIQIAEREENFYCRAGKGLAALTEDECSGRFFTCFKNYNK

Protein Length: 176

Fln nts: GTAGTTGCCAGGTCAATGGCTGGCATTACGGATCCAAAGAATGGGAATTTGCAATCGGGAGGCAGCCAAATGGCGACAGCCAAGACATTCGAGAAGCTCTGTATGATCCCTGAGGTGGAGTTATGATGCCCTCGGCAGGTATGACGTTAAGCTGCAATTGTGCTTTCTATTCTTAAGTGCCTTTTTTGAAGACCAGATCATCTGGTTCGAACAATCAATTGCGCTGTTTATAGGGGAAGGGCTAGTTGCAAGAAAGAATGTGCAAGATGAGCGTAGCTACGACCCATTTGAGGTGGGGAAAATTTACATCAACCTTTTAGCGGATCGTTGCTTGATCGAACCCACATTGAGGGACGTGGGTGGGTCGGTGGTGTATTTCAGGGTGCACGACGTCCTGCGTGATTTGGCAATACAAATCGCTGAGCGGGAAGAAAACTTCTACTGCCGGGCAGGTAAGGGTTTGGCAGCCTTAACTGAAGATGAATGTTCAGGACGCTTCTTCACGTGTTTTAAGAACTACAACAAATT

Fln Alignment:

sp_v1.1_unigene44290___LRWSYDALGRYDVKLQLCFLFLSAFFEDQIIWFEQSIALFIGEGLVARKNVQDERSYDPFEVGKIYINLLADRCLIEPTLRDVGGSVVYFRVHDVLRDLAIQIAEREENFYCRAGKGLAALTEDE
B8LLB4_______________VRWSYHDLPN---NLKMCFLYCAAFPEDAWIQVETLVEMWTAEGLVPRKGT----TYF-MDVGREYIDALVDRCLIEY----VDAKNEYIKVHDILRDVAIYVGQEEENWLFLSGQHLQHFPSEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain