SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44277

Length: 508 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene44277
TCGGTTGGTCTCGCCGTTCGAAGGGCCGCCTACGGTGTCCTCCGATTCGTAATGGAGTCGGGCGCAAAGGGATGCGAGGTCGTCATCTCTGGAAAGCTCCGCGCTGCCCGTGCAAAGGCAATGAAGTTCACCGACGGTTTCATGATCCACTCCGGTCAGCCAGCACGCGATTTCATCGACCAGGCAGTACGACACGTCTACCTCCGTCAAGGTGTACTCGGTATCAAGGTCAAGATCATGCTTGCCTTCGACCCCGAAGGCCGTGTTGGTCCCTCCAAGCCCCTCCCAGACTCTGTTACCATCGTCGAGCCAAAGGAGGAGCAGGCCATCTCTGCACCCATCAGCGACTCCAAGGTCCAGGAGGTCCAGACTGCCCCTGCTGCTCAGGTCGAGGCTACTCGAGAGGTTGCCGACGTCGCTCAGCCATACTAGGCGTTTCCTTCCGTGTCTGCTATCTTTACTTGAAGAATACGGTAGCTTTTCGCGTATCATCAGGCTGTAGCTTTCG

Ace file of the UniGene sp_v1.1_unigene44277

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to 40S RIBOSOMAL PROTEIN S3; K02985 small subunit ribosomal protein S3e	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	40s ribosomal protein s3	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	mycelium development	GO:0043581	Biological Process	0.0	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NR91

Fln msg: your sequence is shorter than subject: 144 - 233

Fln protein: SVGLAVRRAAYGVLRFVMESGAKGCEVVISGKLRAARAKAMKFTDGFMIHSGQPARDFIDQAVRHVYLRQGVLGIKVKIMLAFDPEGRVGPSKPLPDSVTIVEPKEEQAISAPISDSKVQEVQTAPAAQVEATREVADVAQPY*

Protein Length: 145

Fln nts: TCGGTTGGTCTCGCCGTTCGAAGGGCCGCCTACGGTGTCCTCCGATTCGTAATGGAGTCGGGCGCAAAGGGATGCGAGGTCGTCATCTCTGGAAAGCTCCGCGCTGCCCGTGCAAAGGCAATGAAGTTCACCGACGGTTTCATGATCCACTCCGGTCAGCCAGCACGCGATTTCATCGACCAGGCAGTACGACACGTCTACCTCCGTCAAGGTGTACTCGGTATCAAGGTCAAGATCATGCTTGCCTTCGACCCCGAAGGCCGTGTTGGTCCCTCCAAGCCCCTCCCAGACTCTGTTACCATCGTCGAGCCAAAGGAGGAGCAGGCCATCTCTGCACCCATCAGCGACTCCAAGGTCCAGGAGGTCCAGACTGCCCCTGCTGCTCAGGTCGAGGCTACTCGAGAGGTTGCCGACGTCGCTCAGCCATACTAG___GCGTTTCCTTCCGTGTCTGCTATCTTTACTTGAAGAATACGGTAGCTTTTCGCGTATCATCAGGCTGTAGCTTTCG

Fln Alignment:

sp_v1.1_unigene44277___GLAVRRAAYGVLRFVMESGAKGCEVVISGKLRAARAKAMKFTDGFMIHSGQPARDFIDQAVRHVYLRQGVLGIKVKIMLAFDPEGRVGPSKPLPDSVTIVEPKEEQAISAPISDSKVQEV
A9NR91_______________GLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDRAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTKPLPDFVTIYTPKDEEDFSSKPSVGNEVEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain