SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44239

Length: 275 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene44239
GTTGTGGGCGAGGAACTCGGTGTGCTCCCAGGGATGGATTCAGTTTTAGCAGTAGGAGCCTTGGAGAGGTTGATACAATTTATTGGAGGAACCACGAGCTATACAAAAGAATTGGATCGCAAATTTGATATGATAATTTATGATGGAATAAGCTGTGAAGAAACTCTGCGAATGGTTGGTGCAGCAGAGAGATCCAGATGGTACATGAGGTATCTTCGTAACCTTGCTGAGAAGACCGATACAGGGAGAGTTACAGCACCTTCACTTCTAAAATT

Ace file of the UniGene sp_v1.1_unigene44239 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	anion-transporting ATPase; K01551 arsenite-transporting ATPase [EC:3.6.3.16]	-	-	4.0e-10	42%
FL-Next	sp=Uncharacterized protein At1g26090, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%
Blast2go	atp binding protein	-	-	9.0989e-23	74%

Source	ECs	Term	Type	e value	Identity
AutoFact	Arsenite-transporting ATPase.	EC:3.6.3.16	-	4.0e-10	42%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastoglobule	GO:0010287	Cellular Component	9.0989e-23	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6DYE4

Fln msg: Distance to subject end: 211 aas, your sequence is shorter than subject: 91 - 455

Fln protein: VVGEELGVLPGMDSVLAVGALERLIQFIGGTTSYTKELDRKFDMIIYDGISCEETLRMVGAAERSRWYMRYLRNLAEKTDTGRVTAPSLLK

Protein Length: 92

Fln nts: GTTGTGGGCGAGGAACTCGGTGTGCTCCCAGGGATGGATTCAGTTTTAGCAGTAGGAGCCTTGGAGAGGTTGATACAATTTATTGGAGGAACCACGAGCTATACAAAAGAATTGGATCGCAAATTTGATATGATAATTTATGATGGAATAAGCTGTGAAGAAACTCTGCGAATGGTTGGTGCAGCAGAGAGATCCAGATGGTACATGAGGTATCTTCGTAACCTTGCTGAGAAGACCGATACAGGGAGAGTTACAGCACCTTCACTTCTAAAATT

Fln Alignment:

sp_v1.1_unigene44239___VVGEELGVLPGMDSVLAVGALERLIQFIGGTTSYTKELDRKFDMIIYDGISCEETLRMVGAAERSRWYMRYLRNLAEKTDTGRVTAPSLLK
Q6DYE4_______________VVGEELGVLPGMDSIFSMLELERLVGFFRQATRKNHK-GKPFDVIIYDGISTEETLRMIGLSSKTRLYAKYLRSLAEKTDLGRLTSPSIMR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain