SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44226

Length: 406 nt

UniGene Fasta

>sp_v1.1_unigene44226
TATTAATCAATGATGTACTTGGGGAAGTGTCTCAGCGGCTGAAACGTATTAATCTCATTGACTTACTCACCAGGGATATGGTGGATCTGATAGGGAGTCACATAGAACTTTATAGAAGAAACCAAGCTTGTATAGGGGTTGATGTTATGGTGACCCTCTCTTCTGAAGAAAGGGATGAAAGGCTGAAGCACTACTTGGCTGCTTCTAAGGAACTGCACCCTGCCCTTATATCTTCAGAGGTTGAGTGCAAGGTTCTCCAACGGTTAATGGGAGGAGTAGTGGCAATTGTCTTAAGGCAGCAGGATGCTGAATGCCCTCTTGTCATGTCTTGCTCGAGAGCTTCTAGCCTGTGCAGTTATGCAGCCAATCATGAACTTTGCAAGTCCAATGTTCATTAATGAGCTCA

Ace file of the UniGene sp_v1.1_unigene44226

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phox (PX) domain-containing protein [Arabidopsis thaliana]	-	-	2.0e-27	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	protein	-	-	2.55947e-41	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Phox-associated domain	IPR003114	-	2.55947e-41	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABS5

Fln msg: your sequence is shorter than subject: 132 - 290

Fln protein: LINDVLGEVSQRLKRINLIDLLTRDMVDLIGSHIELYRRNQACIGVDVMVTLSSEERDERLKHYLAASKELHPALISSEVECKVLQRLMGGVVAIVLRQQDAECPLVMSCSRASSLCSYAANHELCKSNVH*

Protein Length: 133

Fln nts: TATTAATCAATGATGTACTTGGGGAAGTGTCTCAGCGGCTGAAACGTATTAATCTCATTGACTTACTCACCAGGGATATGGTGGATCTGATAGGGAGTCACATAGAACTTTATAGAAGAAACCAAGCTTGTATAGGGGTTGATGTTATGGTGACCCTCTCTTCTGAAGAAAGGGATGAAAGGCTGAAGCACTACTTGGCTGCTTCTAAGGAACTGCACCCTGCCCTTATATCTTCAGAGGTTGAGTGCAAGGTTCTCCAACGGTTAATGGGAGGAGTAGTGGCAATTGTCTTAAGGCAGCAGGATGCTGAATGCCCTCTTGTCATGTCTTGCTCGAGAGCTTCTAGCCTGTGCAGTTATGCAGCCAATCATGAACTTTGCAAGTCCAATGTTCATTAA___TGAGCTCA

Fln Alignment:

sp_v1.1_unigene44226___LINDVLGEVSQRLKRINLIDLLTRDMVDLIGSHIELYRRNQACIGVDVMVTLSSEERDERLKHYLAASKELHPALISSEVECKVLQRLMGGVVAIVLRQQDAECPLVMSCSRASSLC
D5ABS5_______________LINDVIGEISQRVRHINLIDLLTRDMVDLIGSHLELYRRNQARIGVHVMGTLSSEERDERLKHCLAAAKELHPALISPEDEYKVLKRLMGGVVAVVLRPQEAQCPIVRCLAQELLAC

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain