SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44200

Length: 502 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene44200
ATGCGTTACCTATTGAGATATTTGTCATGGTCTTGAGGAATTATGCAGAGAAGAATCTCATAGCTCTGAGAAAGTTCGCAAAGAAGAAGAAGTTAAGAATCAAGAGTAAGCCAGAGATCAATGCACTTAATATGCTTCTGGATTCTCTTTGCAAGTGCAGTCTGGTTGCGGAGGCCCAGGCCTTGTATGAGAAGTTGAGGGGTAGATTTAAACCTGATGCACAGACCTATACTGTTCTTTTCTTTGGGTGGTGCAGACTTAGGAAGCCGGATAAGGCCATGGAGATTATGAGTGTAATGATTGAGAGGGGTCATGCTCCCGATACTTTTACTTGCAATACTGTGCTTGATGCATTCTGTAAGGATGGCCAGGTAGGGGAGGCTCTGAAACTCTTCGAATATATGAAAACAAAGGGGTGTACTCGTTCTGCACCAACTGCGAAGACTTATAGCATCATGATTGTTGCCCTGGCTCAATCAGAGAAAACAGAGGAAGCGTTGAG

Ace file of the UniGene sp_v1.1_unigene44200 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein	-	-	4.00001e-41	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Blast2go	pentatricopeptide repeat-containing protein	-	-	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	0.0	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL58

Fln msg: Distance to subject end: 181 aas, your sequence is shorter than subject: 166 - 700

Fln protein: ALPIEIFVMVLRNYAEKNLIALRKFAKKKKLRIKSKPEINALNMLLDSLCKCSLVAEAQALYEKLRGRFKPDAQTYTVLFFGWCRLRKPDKAMEIMSVMIERGHAPDTFTCNTVLDAFCKDGQVGEALKLFEYMKTKGCTRSAPTAKTYSIMIVALAQSEKTEEAL

Protein Length: 167

Fln nts: ATGCGTTACCTATTGAGATATTTGTCATGGTCTTGAGGAATTATGCAGAGAAGAATCTCATAGCTCTGAGAAAGTTCGCAAAGAAGAAGAAGTTAAGAATCAAGAGTAAGCCAGAGATCAATGCACTTAATATGCTTCTGGATTCTCTTTGCAAGTGCAGTCTGGTTGCGGAGGCCCAGGCCTTGTATGAGAAGTTGAGGGGTAGATTTAAACCTGATGCACAGACCTATACTGTTCTTTTCTTTGGGTGGTGCAGACTTAGGAAGCCGGATAAGGCCATGGAGATTATGAGTGTAATGATTGAGAGGGGTCATGCTCCCGATACTTTTACTTGCAATACTGTGCTTGATGCATTCTGTAAGGATGGCCAGGTAGGGGAGGCTCTGAAACTCTTCGAATATATGAAAACAAAGGGGTGTACTCGTTCTGCACCAACTGCGAAGACTTATAGCATCATGATTGTTGCCCTGGCTCAATCAGAGAAAACAGAGGAAGCGTTGAG

Fln Alignment:

sp_v1.1_unigene44200___PEINALNMLLDSLCKCSLVAEAQALYEKL-RGRFKPDAQTYTVLFFGWCRLRKPDKAMEIMSVMIERGHAPDTFTCNTVLDAFCKDGQVGEALKLFEYMKTKGCTRSAPTAKTYSIMIVALAQSEKTEEAL
B8LL58_______________PNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCT---PDHVTYTTLIQGLVQGNQLPDAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain