SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44172

Length: 511 nt

UniGene Fasta

>sp_v1.1_unigene44172
TTGACTAATGTGTTGTTAGCTCTGAGAGACAGAGCATGGAGACTCCGCTGTGTTTGATCACTGTTTTCTTGGTACTGTTAATTATGGCTGTAATGGAAGGTGCGGCCGTCTCAGACATGCGGATCCTGTCTGGCGCCCCAGCCCCAGCCCCAGCCCCGAGCTACAGTTGTGAAGGAAAACGTTTCTATACCTACGAGTCCTTCATCGCTGCCGCCAATTCGTTTCCGGCCTTCGGAAACACCGGATCATCAAACGATTCCAGGAGGGAGGTTGCGGCATTTCTCGCTAATGTGGTCGACATGAGTCAGGAATTCTGCTATGTTGATCAATCAAATGCTCAGCCCTACTGCAATCAAAGTTCCACTAACTATTCCTGTGCTAATGGAGACCGTTATTTTGCTCGCGGACCCTTACGATTAACTGGGAACAACAACTACGAAGCTGCGGGAAGTACCTTAAATTGGACTTATTGGAGAACCCAGAGAAGGTGTCTGAAAATTCCACAATTTCT

Ace file of the UniGene sp_v1.1_unigene44172

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Class II chitinase 2-1 n=1 Tax=Pseudotsuga menziesii RepID=D7P704_PSEMZ	-	-	4.0e-26	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	class iv chitinase	-	-	7.49877e-27	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 19, catalytic	IPR000726	-	7.49877e-27	64%
Blast2go	Lysozyme-like domain	IPR023346	-	7.49877e-27	64%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NM41

Fln msg: Distance to subject end: 69 aas, your sequence is shorter than subject: 158 - 231

Fln protein: METPLCLITVFLVLLIMAVMEGAAVSDMRILSGAPAPAPAPSYSCEGKRFYTYESFIAAANSFPAFGNTGSSNDSRREVAAFLANVVDMSQEFCYVDQSNAQPYCNQSSTNYSCANGDRYFARGPLRLTGNNNYEAAGSTLNWTYWRTQRRCLKIPQF

Protein Length: 159

Fln nts: TTGACTAATGTGTTGTTAGCTCTGAGAGACAGAGC_-_ATGGAGACTCCGCTGTGTTTGATCACTGTTTTCTTGGTACTGTTAATTATGGCTGTAATGGAAGGTGCGGCCGTCTCAGACATGCGGATCCTGTCTGGCGCCCCAGCCCCAGCCCCAGCCCCGAGCTACAGTTGTGAAGGAAAACGTTTCTATACCTACGAGTCCTTCATCGCTGCCGCCAATTCGTTTCCGGCCTTCGGAAACACCGGATCATCAAACGATTCCAGGAGGGAGGTTGCGGCATTTCTCGCTAATGTGGTCGACATGAGTCAGGAATTCTGCTATGTTGATCAATCAAATGCTCAGCCCTACTGCAATCAAAGTTCCACTAACTATTCCTGTGCTAATGGAGACCGTTATTTTGCTCGCGGACCCTTACGATTAACTGGGAACAACAACTACGAAGCTGCGGGAAGTACCTTAAATTGGACTTATTGGAGAACCCAGAGAAGGTGTCTGAAAATTCCACAATTTCT

Fln Alignment:

sp_v1.1_unigene44172___PLCLITVFLVLLIMAV-MEGAAVSDMRILSGXXXXXXXXSYSCEGKRFYTYESFIAAANSFPAFGNTGSSNDSRREVAAFLANVVDMSQEFCYVDQSNAQPYCNQSSTNYSCANGDRYFARGPLRLTGNNNYEAAGSTL
A9NM41_______________PVNVIFLWLAFALSALSICRGAVSDIATQDFFNGILSAATDGCAGKTFYTYTDFINAANSFSSFGTTGTSDDNKREIAAFFANVAHETTNMCYVEEIAKSDYCDSSNTQYPCASGQQYYGRGPLQLTGNANYGAAGTYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain