SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene44159

Length: 495 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene44159
GAGAAGTGCAGGGACCTCATCATCCATTGCGACATCAAGCCGGAAAACATCCTCTTGGATTCCAATTTCTGTCCCAAGGTGGCTGATTTCGGGCTCGCGAAATTCATGGGGAGAGAGTATAGTCGTGCTCTGACGACTATGAGAGGAACGAGAGGATACTTAGGCCCAGAGTGGCTCTCTGGTTTGCCCATCACTGCCAAGGCTGACGTCTACAGTTTTGGCATGACATTGTTAGAAATCATTGCAGGTAAAAGAAACATGGACGAGGGCTCCGAATCCGGCGAGCTCTGCTTTCCCGCGTGGGCTGCAACTCAGATCAATAGAGGAAACGCCATGGGGGTGCTCGACAAAAGAATTATGAATGATGCAGACCCGGAACAGGTGAAGAGGGCCGCCATCGTAGGAGTTTGGTGCATTCAGGACGATGAAGACGCAAGGCCATCGATGAGTGAAGTTCTGCAGACATTGGAAGGGATTCTTGATGTTCCTTCTATT

Ace file of the UniGene sp_v1.1_unigene44159 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	S-domain receptor-like protein kinase n=2 Tax=Andropogoneae RepID=O82103_MAIZE	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	s-locus lectin protein kinase family protein	-	-	77%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	77%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	77%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	77%
Blast2go	Protein kinase-like domain	IPR011009	-	77%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NM60

Fln msg: Distance to subject end: 35 aas, your sequence is shorter than subject: 165 - 431

Fln protein: EKCRDLIIHCDIKPENILLDSNFCPKVADFGLAKFMGREYSRALTTMRGTRGYLGPEWLSGLPITAKADVYSFGMTLLEIIAGKRNMDEGSESGELCFPAWAATQINRGNAMGVLDKRIMNDADPEQVKRAAIVGVWCIQDDEDARPSMSEVLQTLEGILDVPSI

Protein Length: 166

Fln nts: GAGAAGTGCAGGGACCTCATCATCCATTGCGACATCAAGCCGGAAAACATCCTCTTGGATTCCAATTTCTGTCCCAAGGTGGCTGATTTCGGGCTCGCGAAATTCATGGGGAGAGAGTATAGTCGTGCTCTGACGACTATGAGAGGAACGAGAGGATACTTAGGCCCAGAGTGGCTCTCTGGTTTGCCCATCACTGCCAAGGCTGACGTCTACAGTTTTGGCATGACATTGTTAGAAATCATTGCAGGTAAAAGAAACATGGACGAGGGCTCCGAATCCGGCGAGCTCTGCTTTCCCGCGTGGGCTGCAACTCAGATCAATAGAGGAAACGCCATGGGGGTGCTCGACAAAAGAATTATGAATGATGCAGACCCGGAACAGGTGAAGAGGGCCGCCATCGTAGGAGTTTGGTGCATTCAGGACGATGAAGACGCAAGGCCATCGATGAGTGAAGTTCTGCAGACATTGGAAGGGATTCTTGATGTTCCTTCTATT

Fln Alignment:

sp_v1.1_unigene44159___EKCRDLIIHCDIKPENILLDSNFCPKVADFGLAKFMGREY-SRALTTMRGTRGYLGPEWLSGLPITAKADVYSFGMTLLEIIAGKRNMDEGSESGELCFPAWAATQINRGNAMGVLDK--RIMNDADPEQVKRAAIVGVWCIQDDEDARPSMSEVLQTLEG---ILDVPS
A9NM60_______________EESRLCILHLDVKPQNILVDEYFKAKVSDFGMARCLKRDIESHLVTGVRGTPGYMAPEWLLGAGITSKSDVFSYGMVLLEIISGRRNVDNTRDSDNWYFPSIAINKARQDKMEEIIETGLEMKRPEDLEEAYRLIKTALWCVQSNSGLRPSMGTVVRILEGDLEILDPPS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain